MGE detailed information
MGE type: Genomic_island MGE length: 45686 bp
Accession: NC_012668 Location: 2752863..2798548 Organism: Vibrio cholerae MJ-1236 Replicon: chromosome
Accession: NC_012668 Location: 2752863..2798548 Organism: Vibrio cholerae MJ-1236 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VCD_RS12860 (VCD_003479) | 2747975..2748409 | - | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
| VCD_RS12865 (VCD_003480) | 2748593..2749078 | + | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| VCD_RS12870 (VCD_003481) | 2749680..2750947 | + | 1268 | Protein_2416 | tyrosine-type recombinase/integrase | - |
| VCD_RS20670 | 2750952..2751352 | + | 401 | Protein_2417 | transposase | - |
| VCD_RS20155 | 2751995..2752231 | + | 237 | WP_001919887.1 | tyrosine-type recombinase/integrase | - |
| VCD_RS12880 (VCD_003484) | 2752863..2757425 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| VCD_RS12885 (VCD_003485) | 2757598..2758245 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| VCD_RS12890 (VCD_003486) | 2758248..2759156 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| VCD_RS12895 | 2759165..2759638 | - | 474 | WP_000287237.1 | RDD family protein | - |
| VCD_RS12900 (VCD_003487) | 2759654..2760424 | - | 771 | WP_001880633.1 | accessory colonization factor AcfC | - |
| VCD_RS12905 (VCD_003488) | 2760430..2762310 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| VCD_RS12910 (VCD_003489) | 2762317..2763078 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| VCD_RS12915 (VCD_003490) | 2763078..2763908 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| VCD_RS12920 (VCD_003491) | 2764115..2765131 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| VCD_RS12925 (VCD_003492) | 2765141..2766163 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| VCD_RS12930 (VCD_003493) | 2766138..2767649 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| VCD_RS12935 (VCD_003494) | 2767639..2768097 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| VCD_RS12940 (VCD_003495) | 2768113..2768949 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| VCD_RS20160 (VCD_003496) | 2768937..2769392 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| VCD_RS12950 (VCD_003497) | 2769385..2770854 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| VCD_RS12955 (VCD_003498) | 2770857..2771309 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| VCD_RS12960 (VCD_003499) | 2771309..2772601 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| VCD_RS12965 (VCD_003500) | 2772681..2773355 | - | 675 | WP_001176374.1 | toxin-coregulated pilus major pilin TcpA | - |
| VCD_RS12970 (VCD_003501) | 2773898..2774308 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| VCD_RS12975 (VCD_003502) | 2774293..2774958 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| VCD_RS12980 (VCD_003503) | 2775399..2777261 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| VCD_RS12985 (VCD_003504) | 2777537..2778031 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| VCD_RS12990 (VCD_003505) | 2778141..2779079 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| VCD_RS12995 (VCD_003506) | 2779076..2783677 | - | 4602 | WP_000482254.1 | membrane protein | - |
| VCD_RS13000 (VCD_003507) | 2783790..2786831 | - | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| VCD_RS13005 (VCD_003508) | 2787011..2788531 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| VCD_RS20165 (VCD_003509) | 2788873..2789553 | + | 681 | Protein_2445 | IS5 family transposase | - |
| VCD_RS13020 (VCD_003511) | 2789579..2790556 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| VCD_RS13030 (VCD_003512) | 2791160..2792521 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| VCD_RS13035 (VCD_003513) | 2792518..2792985 | + | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| VCD_RS13040 (VCD_003514) | 2793413..2793991 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| VCD_RS13045 (VCD_003515) | 2793995..2796931 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| VCD_RS13050 (VCD_003516) | 2797001..2797705 | + | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| VCD_RS13055 | 2798039..2798548 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| VCD_RS13060 (VCD_003517) | 2798746..2800425 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| VCD_RS13070 (VCD_003518) | 2800648..2801331 | + | 684 | WP_000841479.1 | MFS transporter | - |
| VCD_RS13075 (VCD_003519) | 2801399..2803015 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|