MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 106469 bp
Accession: NC_008386 Location: 1..106469 Organism: Roseobacter denitrificans OCh 114 Replicon: plasmid pTB1
Accession: NC_008386 Location: 1..106469 Organism: Roseobacter denitrificans OCh 114 Replicon: plasmid pTB1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RD1_RS19485 () | 799..2088 | + | 1290 | WP_011655361.1 | alpha/beta hydrolase | - |
| RD1_RS19490 () | 2096..3301 | - | 1206 | WP_011655362.1 | sodium/glutamate symporter | - |
| RD1_RS19495 () | 3438..4949 | - | 1512 | WP_011655364.1 | BCCT family transporter | - |
| RD1_RS19500 () | 5140..6174 | - | 1035 | WP_011655365.1 | IS481 family transposase ISSod13 | Transposase |
| RD1_RS19505 () | 6349..7359 | - | 1011 | WP_011655366.1 | DUF4105 domain-containing protein | - |
| RD1_RS19510 () | 7740..8723 | - | 984 | WP_011655367.1 | Type IV secretion system protein VirB11 | VF |
| RD1_RS19515 () | 8720..10051 | - | 1332 | WP_011655368.1 | Type IV secretion system protein PtlG | VF |
| RD1_RS19520 () | 10051..10809 | - | 759 | WP_050759149.1 | Type IV secretion system protein virB9 | VF |
| RD1_RS19525 () | 10806..11480 | - | 675 | WP_011655370.1 | Type IV secretion system protein PtlE | VF |
| RD1_RS19530 () | 11544..12716 | - | 1173 | WP_011655371.1 | hypothetical protein | VF |
| RD1_RS19535 () | 12720..13175 | - | 456 | WP_011655372.1 | hypothetical protein | - |
| RD1_RS19540 () | 13178..13888 | - | 711 | WP_011655373.1 | type IV secretion system protein | - |
| RD1_RS19545 () | 14019..16379 | - | 2361 | WP_011655374.1 | VirB4 protein, putative | - |
| RD1_RS19550 () | 16372..16647 | - | 276 | WP_011655375.1 | VirB3 family type IV secretion system protein | - |
| RD1_RS19555 () | 16650..16904 | - | 255 | WP_105880238.1 | TrbC/VirB2 family protein | - |
| RD1_RS19560 () | 16919..17557 | - | 639 | WP_105880237.1 | lytic transglycosylase domain-containing protein | - |
| RD1_RS19565 () | 17608..18087 | - | 480 | WP_011655378.1 | hypothetical protein | - |
| RD1_RS19580 () | 19199..19765 | + | 567 | WP_044033563.1 | hypothetical protein | - |
| RD1_RS19585 () | 19963..21318 | + | 1356 | WP_011655380.1 | AAA family ATPase | - |
| RD1_RS19590 () | 21315..22337 | + | 1023 | WP_011655381.1 | ParB N-terminal domain-containing protein | - |
| RD1_RS19595 () | 22578..23891 | + | 1314 | WP_011655382.1 | replication protein C | - |
| RD1_RS19600 () | 23967..24197 | + | 231 | WP_011655383.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| RD1_RS19605 () | 24194..24616 | + | 423 | WP_011655384.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| RD1_RS19610 () | 24822..25127 | - | 306 | WP_011655385.1 | hypothetical protein | - |
| RD1_RS19615 () | 25181..26395 | - | 1215 | WP_011655387.1 | tyrosine-type recombinase/integrase | - |
| RD1_RS19620 () | 26520..27482 | + | 963 | WP_011655388.1 | DUF1403 family protein | - |
| RD1_RS19625 () | 27479..28108 | + | 630 | WP_011655389.1 | SMC-Scp complex subunit ScpB | - |
| RD1_RS20525 () | 28311..28910 | + | 600 | WP_050759150.1 | DUF433 domain-containing protein | - |
| RD1_RS19635 () | 28920..29300 | + | 381 | WP_044033566.1 | DUF5615 family PIN-like protein | - |
| RD1_RS19640 () | 29455..32001 | + | 2547 | WP_011655392.1 | TerB N-terminal domain-containing protein | - |
| RD1_RS19645 () | 31979..33286 | + | 1308 | WP_011655393.1 | ATP-binding protein | - |
| RD1_RS19650 () | 33289..35469 | + | 2181 | WP_011655394.1 | DEAD/DEAH box helicase | - |
| RD1_RS19655 () | 35608..36162 | - | 555 | WP_143090276.1 | hypothetical protein | - |
| RD1_RS19660 () | 36152..37270 | - | 1119 | WP_011655396.1 | SAVED domain-containing protein | - |
| RD1_RS19665 () | 37272..37760 | - | 489 | WP_011655397.1 | Mov34/MPN/PAD-1 family protein | - |
| RD1_RS19670 () | 37738..39411 | - | 1674 | WP_171960019.1 | ThiF family adenylyltransferase | - |
| RD1_RS19675 () | 39480..40715 | - | 1236 | WP_011655399.1 | nucleotidyltransferase | - |
| RD1_RS19680 () | 40781..41011 | - | 231 | WP_044033569.1 | WGR domain-containing protein | - |
| RD1_RS19685 () | 41001..41819 | - | 819 | WP_011655401.1 | WYL domain-containing protein | - |
| RD1_RS19690 () | 41892..43037 | + | 1146 | WP_011655402.1 | exonuclease SbcCD subunit D | - |
| RD1_RS19695 () | 43034..46093 | + | 3060 | WP_011655403.1 | AAA family ATPase | - |
| RD1_RS20760 () | 46109..46399 | + | 291 | WP_011655404.1 | HNH endonuclease | - |
| RD1_RS19700 () | 46690..47613 | - | 924 | WP_044033571.1 | AAA family ATPase | - |
| RD1_RS19705 () | 47573..49015 | - | 1443 | WP_044033572.1 | AAA family ATPase | - |
| RD1_RS19710 () | 49284..50192 | - | 909 | WP_011655407.1 | tyrosine-type recombinase/integrase | - |
| RD1_RS19715 () | 50313..50930 | - | 618 | WP_011655408.1 | hypothetical protein | - |
| RD1_RS19725 () | 51672..52112 | + | 441 | WP_044033574.1 | hypothetical protein | - |
| RD1_RS21045 () | 52102..52698 | + | 597 | WP_105880229.1 | hypothetical protein | - |
| RD1_RS19735 () | 52785..60155 | + | 7371 | WP_187148494.1 | Bifunctional hemolysin/adenylate cyclase | VF |
| RD1_RS19740 () | 60127..60360 | + | 234 | WP_011655411.1 | hypothetical protein | - |
| RD1_RS19745 () | 61210..61917 | - | 708 | WP_171960020.1 | IS6 family transposase IS15DI | Transposase |
| RD1_RS19750 () | 61916..62677 | + | 762 | WP_011655415.1 | IS21 family transposase ISRel16 | Transposase |
| RD1_RS19760 () | 63552..64235 | - | 684 | WP_171960021.1 | antirestriction protein | - |
| RD1_RS19765 () | 64309..66237 | - | 1929 | WP_011655418.1 | PhoX family phosphatase | - |
| RD1_RS19770 () | 66532..67182 | + | 651 | WP_105880240.1 | thermonuclease family protein | - |
| RD1_RS19775 () | 67439..68125 | - | 687 | Protein_56 | IS21 family transposase | - |
| RD1_RS19780 () | 68408..68989 | + | 582 | WP_011655421.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RD1_RS20530 () | 69182..69730 | + | 549 | WP_050759152.1 | hypothetical protein | - |
| RD1_RS21050 () | 69852..70049 | + | 198 | WP_105880236.1 | hypothetical protein | - |
| RD1_RS19795 () | 70063..70446 | - | 384 | WP_044033597.1 | nuclease | - |
| RD1_RS19800 () | 70616..71179 | - | 564 | WP_011655425.1 | hypothetical protein | - |
| RD1_RS19805 () | 71829..72164 | + | 336 | WP_011655426.1 | DUF1419 domain-containing protein | - |
| RD1_RS19810 () | 72419..74314 | + | 1896 | WP_011655427.1 | ParB/RepB/Spo0J family partition protein | - |
| RD1_RS19815 () | 74414..74755 | + | 342 | WP_011655428.1 | hypothetical protein | - |
| RD1_RS19820 () | 74755..75591 | + | 837 | WP_011655429.1 | hypothetical protein | - |
| RD1_RS21055 () | 75588..75851 | + | 264 | WP_044033578.1 | hypothetical protein | - |
| RD1_RS21220 () | 75934..76443 | + | 510 | WP_011655432.1 | hypothetical protein | - |
| RD1_RS19835 () | 76587..76832 | + | 246 | WP_011655433.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| RD1_RS19840 () | 76832..77248 | + | 417 | WP_011655434.1 | type II toxin-antitoxin system VapC family toxin | - |
| RD1_RS21200 () | 78253..78573 | + | 321 | WP_050759153.1 | DUF736 family protein | - |
| RD1_RS19855 () | 79343..80545 | + | 1203 | WP_011655439.1 | multidrug effflux MFS transporter | - |
| RD1_RS19860 () | 81274..82236 | - | 963 | WP_011655440.1 | pirin family protein | - |
| RD1_RS19865 () | 82315..82908 | - | 594 | WP_105880239.1 | histidine phosphatase family protein | - |
| RD1_RS19870 () | 83021..85210 | - | 2190 | WP_011655442.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| RD1_RS19875 () | 85212..85664 | - | 453 | WP_011655443.1 | (2Fe-2S)-binding protein | - |
| RD1_RS19880 () | 85749..87347 | - | 1599 | WP_011655444.1 | MFS transporter | - |
| RD1_RS19885 () | 87331..87630 | - | 300 | WP_011655445.1 | N-acetyltransferase | - |
| RD1_RS19890 () | 87690..88193 | - | 504 | WP_011655446.1 | DNA starvation/stationary phase protection protein Dps | - |
| RD1_RS19895 () | 88309..90025 | - | 1717 | Protein_79 | amidohydrolase | - |
| RD1_RS19900 () | 90092..90799 | - | 708 | WP_011655449.1 | hydrolase | - |
| RD1_RS19905 () | 90824..91069 | - | 246 | WP_011655450.1 | DUF1427 family protein | - |
| RD1_RS19910 () | 91168..91794 | - | 627 | WP_011655451.1 | alpha/beta hydrolase | - |
| RD1_RS19915 () | 91806..92735 | - | 930 | WP_044033600.1 | VOC family protein | - |
| RD1_RS19920 () | 92846..93760 | + | 915 | WP_011655453.1 | LysR family transcriptional regulator | - |
| RD1_RS20540 () | 93840..94742 | - | 903 | WP_011655454.1 | RCS-specific HTH-type transcriptional activator RclR | VF |
| RD1_RS20795 () | 95797..96573 | + | 777 | WP_105880233.1 | Regulatory protein PchR | VF |
| RD1_RS19935 () | 97386..98282 | + | 897 | WP_011655457.1 | DUF1738 domain-containing protein | - |
| RD1_RS19940 () | 98282..98869 | + | 588 | WP_011655458.1 | hypothetical protein | - |
| RD1_RS19945 () | 99308..99955 | - | 648 | WP_011655460.1 | hypothetical protein | - |
| RD1_RS19950 () | 99942..100655 | - | 714 | WP_011655461.1 | conjugal transfer ATPase VirC1 | - |
| RD1_RS19955 () | 101176..101655 | + | 480 | WP_044033582.1 | T-DNA border endonuclease VirD1 | Relaxase |
| RD1_RS20545 () | 101652..104000 | + | 2349 | WP_050759155.1 | T-DNA border endonuclease VirD2 | Relaxase |
| RD1_RS19965 () | 104010..106175 | + | 2166 | WP_011655465.1 | Protein VirD4 | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|