MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70159 bp
Accession: NC_005813 Location: 1..70159 Organism: Yersinia pestis biovar Microtus str. 91001 Replicon: plasmid pCD1
Accession: NC_005813 Location: 1..70159 Organism: Yersinia pestis biovar Microtus str. 91001 Replicon: plasmid pCD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YP_RS21015 () | 87..1109 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| YP_RS21020 () | 1109..1888 | + | 780 | WP_001297096.1 | IS21 family transposase IS100kyp | Transposase |
| YP_RS24775 () | 1959..2357 | + | 399 | WP_011171988.1 | IS3 family transposase ISKpn37 | Transposase |
| YP_RS23520 () | 2340..2648 | - | 309 | Protein_3 | DDE-type integrase/transposase/recombinase | - |
| YP_RS21030 () | 2774..3022 | + | 249 | WP_002233137.1 | Phospholipase D | VF |
| YP_RS21035 () | 3160..3414 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| YP_RS21040 () | 3656..3730 | + | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| YP_RS21045 () | 3711..4589 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| YP_RS23530 () | 5762..6001 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| YP_RS24005 () | 6179..6491 | + | 313 | Protein_9 | IS3 family transposase ISKpn37 | Transposase |
| YP_RS21055 () | 6747..7196 | + | 450 | WP_002229809.1 | hypothetical protein | VF |
| YP_RS21060 () | 7204..9402 | + | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| YP_RS21065 () | 9798..10664 | + | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| YP_RS21070 () | 11250..11828 | - | 579 | Protein_13 | IS3 family transposase ISYpe1 | Transposase |
| YP_RS21075 () | 11831..12064 | + | 234 | Protein_14 | transposase domain-containing protein | - |
| YP_RS21080 () | 12347..13753 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| YP_RS23545 () | 13974..14246 | - | 273 | Protein_16 | transposase | - |
| YP_RS24010 () | 14265..15294 | - | 1030 | Protein_17 | IS3 family transposase | - |
| YP_RS21100 () | 15842..16189 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| YP_RS21105 () | 16414..17079 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| YP_RS21110 () | 17025..17654 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| YP_RS21115 () | 17654..18388 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| YP_RS21120 () | 18395..18742 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| YP_RS21125 () | 18743..19240 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| YP_RS21130 () | 19237..19584 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| YP_RS21135 () | 19586..19849 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| YP_RS21140 () | 19850..20050 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| YP_RS21145 () | 20047..21306 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| YP_RS21150 () | 21303..23126 | - | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| YP_RS21155 () | 23132..23545 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| YP_RS21160 () | 23771..23869 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| YP_RS21165 () | 23948..24763 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| YP_RS21170 () | 24887..25282 | - | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| YP_RS21175 () | 25858..26922 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| YP_RS21180 () | 26922..27707 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| YP_RS21185 () | 27704..27970 | - | 267 | WP_002212945.1 | hypothetical protein | VF |
| YP_RS21190 () | 27972..28625 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| YP_RS21195 () | 28622..29545 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| YP_RS21200 () | 29542..30909 | - | 1368 | WP_002212950.1 | hypothetical protein | VF |
| YP_RS21205 () | 30909..31373 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| YP_RS21210 () | 31370..32689 | - | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| YP_RS21215 () | 32887..33768 | + | 882 | WP_011171994.1 | Outer membrane protein YopN | VF |
| YP_RS21220 () | 33749..34027 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| YP_RS21225 () | 34014..34385 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| YP_RS21230 () | 34382..34750 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| YP_RS21235 () | 34747..35091 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| YP_RS21240 () | 35078..37192 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| YP_RS21245 () | 37189..37629 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| YP_RS21250 () | 37671..37958 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| YP_RS21255 () | 37960..38934 | + | 975 | WP_011171995.1 | Virulence-associated V antigen | VF |
| YP_RS21260 () | 38937..39443 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| YP_RS21265 () | 39421..40626 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| YP_RS21270 () | 40645..41565 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| YP_RS24015 () | 42033..42670 | - | 638 | Protein_53 | IS6 family transposase | - |
| YP_RS21280 () | 42691..42900 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| YP_RS21285 () | 43294..44397 | + | 1104 | WP_002231149.1 | Outer membrane protein YopM | VF |
| YP_RS21290 () | 44440..44757 | - | 318 | Protein_56 | IS256 family transposase ISSod4 | Transposase |
| YP_RS24780 () | 44639..44884 | - | 246 | WP_116442925.1 | transposase | - |
| YP_RS23565 () | 44887..45105 | + | 219 | Protein_58 | IS6 family transposase | - |
| YP_RS21295 () | 45633..46052 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| YP_RS23570 () | 46070..46351 | - | 282 | Protein_60 | DDE-type integrase/transposase/recombinase | - |
| YP_RS21305 () | 46757..47155 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| YP_RS21310 () | 47155..48123 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| YP_RS21315 () | 48623..49171 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| YP_RS24020 () | 49330..49623 | + | 294 | Protein_64 | IS3 family transposase | - |
| YP_RS21320 () | 49769..50398 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| YP_RS24570 () | 50505..51650 | + | 1146 | Protein_66 | IS3 family transposase | - |
| YP_RS21340 () | 52410..53576 | + | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| YP_RS21345 () | 53573..54538 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YP_RS24785 () | 54698..54934 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| YP_RS24970 () | 55083..55256 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| YP_RS24030 () | 55342..55634 | + | 293 | Protein_71 | IS6 family transposase ISEas1 | Transposase |
| YP_RS21355 () | 55800..56042 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| YP_RS21360 () | 56035..56334 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YP_RS21365 () | 56474..57133 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| YP_RS21370 () | 57327..57719 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| YP_RS21375 () | 57782..58426 | - | 645 | Protein_76 | IS3 family transposase ISYen3 | Transposase |
| YP_RS21385 () | 58529..59701 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| YP_RS21390 () | 59701..60099 | + | 399 | Protein_78 | IS21 family transposase IS21 | Transposase |
| YP_RS21395 () | 60476..60901 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| YP_RS21410 () | 62248..62577 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| YP_RS21415 () | 62716..63180 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| YP_RS21420 () | 63199..63750 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YP_RS21425 () | 63914..66229 | + | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| YP_RS21430 () | 66262..66612 | - | 351 | Protein_85 | IS3 family transposase IS1351 | Transposase |
| YP_RS23610 () | 67212..68515 | + | 1304 | Protein_86 | Adhesin YadA | VF |
| YP_RS24975 () | 68585..68743 | + | 159 | Protein_87 | EamA family transporter | - |
| YP_RS21450 () | 68841..69110 | - | 270 | WP_042469136.1 | transposase | - |
| YP_RS21455 () | 69179..69637 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| YP_RS21460 () | 69809..70126 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|