MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 67473 bp
Accession: NC_004632 Location: 1..67473 Organism: Pseudomonas syringae pv. tomato str. DC3000 Replicon: plasmid pDC3000B
Accession: NC_004632 Location: 1..67473 Organism: Pseudomonas syringae pv. tomato str. DC3000 Replicon: plasmid pDC3000B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSPTO_RS29075 () | 350..1660 | + | 1311 | Protein_0 | replication initiation protein | - |
| PSPTO_RS29080 () | 1841..3070 | - | 1230 | WP_004667395.1 | IS91 family transposase ISPsy3 | Transposase |
| PSPTO_RS29085 () | 3277..3750 | + | 474 | WP_011102937.1 | DUF3757 domain-containing protein | - |
| PSPTO_RS29095 () | 4424..6106 | - | 1683 | WP_011106957.1 | acid phosphatase | - |
| PSPTO_RS29100 () | 7113..7556 | + | 444 | Protein_4 | hypothetical protein | VF |
| PSPTO_RS29105 () | 7588..8028 | + | 441 | WP_011106959.1 | hypothetical protein | VF |
| PSPTO_RS30085 () | 8099..8365 | - | 267 | WP_080392168.1 | IS91 family transposase IS801 | Transposase |
| PSPTO_RS29115 () | 8453..9316 | - | 864 | Protein_7 | diguanylate phosphodiesterase | - |
| PSPTO_RS29120 () | 9553..10932 | + | 1380 | WP_044393502.1 | MFS transporter | - |
| PSPTO_RS29125 () | 11077..11826 | + | 750 | Protein_9 | DNA polymerase V subunit UmuC | - |
| PSPTO_RS29130 () | 12398..12593 | + | 196 | Protein_10 | LysR family transcriptional regulator | - |
| PSPTO_RS29135 () | 12597..13712 | - | 1116 | WP_044393500.1 | hypothetical protein | - |
| PSPTO_RS29140 () | 13966..14439 | - | 474 | Protein_12 | DUF3757 domain-containing protein | - |
| PSPTO_RS29145 () | 14664..15407 | - | 744 | WP_044393498.1 | class I SAM-dependent methyltransferase | - |
| PSPTO_RS29150 () | 15706..16129 | + | 424 | Protein_14 | IS5 family transposase | - |
| PSPTO_RS29155 () | 16194..16424 | + | 231 | WP_044393496.1 | hypothetical protein | - |
| PSPTO_RS29160 () | 16446..16799 | + | 354 | WP_011106966.1 | hypothetical protein | - |
| PSPTO_RS29165 () | 17333..18283 | + | 951 | WP_164923181.1 | IS5 family transposase ISPssy | Transposase |
| PSPTO_RS29170 () | 18458..18877 | - | 420 | WP_005769733.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PSPTO_RS29175 () | 18874..19131 | - | 258 | WP_003381346.1 | Arc family DNA-binding protein | Antitoxin Detail |
| PSPTO_RS29180 () | 19504..20451 | - | 948 | WP_005769731.1 | hypothetical protein | - |
| PSPTO_RS29185 () | 20813..21094 | - | 282 | WP_004666803.1 | hypothetical protein | - |
| PSPTO_RS29190 () | 21094..21777 | - | 684 | WP_002556051.1 | AAA family ATPase | - |
| PSPTO_RS29195 () | 22172..22372 | + | 201 | WP_002556050.1 | molecular chaperone DnaK | - |
| PSPTO_RS29200 () | 22410..22631 | + | 222 | WP_005769728.1 | hypothetical protein | - |
| PSPTO_RS29205 () | 22964..23584 | - | 621 | WP_005769724.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PSPTO_RS29210 () | 23792..24130 | + | 339 | WP_011106968.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PSPTO_RS29215 () | 24130..24417 | + | 288 | WP_002556002.1 | helix-turn-helix domain-containing protein | - |
| PSPTO_RS29220 () | 24479..24895 | + | 417 | WP_002556003.1 | hypothetical protein | - |
| PSPTO_RS29225 () | 25355..25732 | + | 378 | WP_003344294.1 | hypothetical protein | - |
| PSPTO_RS29230 () | 25779..26615 | + | 837 | WP_011106971.1 | DUF945 domain-containing protein | - |
| PSPTO_RS29235 () | 26683..26883 | + | 201 | WP_004666908.1 | hypothetical protein | - |
| PSPTO_RS29240 () | 26950..27228 | - | 279 | WP_004661031.1 | mobilization protein | - |
| PSPTO_RS29245 () | 27526..27870 | - | 345 | WP_005622131.1 | hypothetical protein | - |
| PSPTO_RS29250 () | 28130..28459 | + | 330 | WP_003344297.1 | ribbon-helix-helix protein, CopG family | - |
| PSPTO_RS29255 () | 28470..30425 | + | 1956 | WP_011106973.1 | hypothetical protein | Relaxase |
| PSPTO_RS29260 () | 30760..30954 | + | 195 | Protein_36 | FadR family transcriptional regulator | - |
| PSPTO_RS29265 () | 31003..31812 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| PSPTO_RS29270 () | 31809..32831 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| PSPTO_RS29275 () | 32917..33429 | + | 513 | Protein_39 | FadR family transcriptional regulator | - |
| PSPTO_RS29280 () | 33497..34693 | + | 1197 | WP_011106975.1 | L-2-hydroxyglutarate oxidase | - |
| PSPTO_RS29285 () | 34735..36081 | + | 1347 | WP_011106976.1 | MFS transporter | - |
| PSPTO_RS29290 () | 36137..36322 | + | 186 | WP_011106977.1 | hypothetical protein | - |
| PSPTO_RS29295 () | 36339..36692 | - | 354 | WP_003319387.1 | helix-turn-helix domain-containing protein | - |
| PSPTO_RS29300 () | 36937..37470 | + | 534 | WP_011106978.1 | transcriptional regulator | - |
| PSPTO_RS29305 () | 37559..37768 | + | 210 | WP_003344343.1 | hypothetical protein | - |
| PSPTO_RS29310 () | 38061..38552 | + | 492 | WP_010209157.1 | hypothetical protein | VF |
| PSPTO_RS29315 () | 38589..39062 | + | 474 | WP_011106980.1 | DotD/TraH family lipoprotein | - |
| PSPTO_RS29320 () | 39059..39859 | + | 801 | WP_011106981.1 | hypothetical protein | VF |
| PSPTO_RS29325 () | 39856..41037 | + | 1182 | WP_011106982.1 | hypothetical protein | VF |
| PSPTO_RS29330 () | 41137..41733 | + | 597 | WP_054070003.1 | hypothetical protein | - |
| PSPTO_RS29335 () | 41730..42281 | + | 552 | WP_046463759.1 | Cardiolipin synthase B | VF |
| PSPTO_RS29340 () | 42318..42563 | + | 246 | WP_004666892.1 | hypothetical protein | - |
| PSPTO_RS29345 () | 42592..42879 | + | 288 | WP_004668192.1 | IcmT/TraK family protein | - |
| PSPTO_RS29350 () | 42922..47595 | + | 4674 | WP_011106985.1 | DNA primase | - |
| PSPTO_RS29355 () | 47621..47974 | + | 354 | WP_005622158.1 | conjugal transfer protein | - |
| PSPTO_RS29360 () | 47971..48678 | + | 708 | WP_011107031.1 | DotI/IcmL/TraM family protein | - |
| PSPTO_RS29365 () | 48735..49793 | + | 1059 | WP_011106987.1 | hypothetical protein | VF |
| PSPTO_RS29370 () | 49799..51157 | + | 1359 | WP_011106988.1 | conjugal transfer protein TraO | - |
| PSPTO_RS29375 () | 51154..51864 | + | 711 | WP_011106989.1 | conjugal transfer protein TraP | - |
| PSPTO_RS29380 () | 51873..52415 | + | 543 | WP_003344373.1 | conjugal transfer protein TraQ | - |
| PSPTO_RS29385 () | 52491..52886 | + | 396 | WP_005769766.1 | conjugal transfer protein TraR | - |
| PSPTO_RS29390 () | 52968..53579 | + | 612 | WP_003344377.1 | hypothetical protein | - |
| PSPTO_RS29395 () | 53554..56610 | + | 3057 | WP_011106991.1 | conjugal transfer protein | - |
| PSPTO_RS29400 () | 56621..57835 | + | 1215 | WP_011106992.1 | conjugal transfer protein TraW | - |
| PSPTO_RS29405 () | 57825..58427 | + | 603 | WP_003344384.1 | conjugal transfer protein TraX | - |
| PSPTO_RS29410 () | 58458..60602 | + | 2145 | WP_011106993.1 | DotA/TraY family protein | - |
| PSPTO_RS29415 () | 60705..60950 | + | 246 | WP_003344389.1 | hypothetical protein | - |
| PSPTO_RS29420 () | 60947..61594 | + | 648 | WP_003344391.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PSPTO_RS29425 () | 61687..62889 | + | 1203 | WP_011106995.1 | hypothetical protein | - |
| PSPTO_RS29430 () | 62879..63256 | - | 378 | WP_011106996.1 | PIN domain-containing protein | - |
| PSPTO_RS29435 () | 63253..63453 | - | 201 | WP_011106997.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| PSPTO_RS29440 () | 63546..64631 | + | 1086 | WP_011106998.1 | thioredoxin fold domain-containing protein | - |
| PSPTO_RS29445 () | 64618..66906 | + | 2289 | WP_011106999.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PSPTO_RS29450 () | 66984..67412 | + | 429 | WP_011107000.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|