MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70305 bp
Accession: NC_003131 Location: 1..70305 Organism: Yersinia pestis CO92 Replicon: plasmid pCD1
Accession: NC_003131 Location: 1..70305 Organism: Yersinia pestis CO92 Replicon: plasmid pCD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPO_RS00050 () | 88..1110 | + | 1023 | WP_000255944.1 | IS21-like element IS100 family transposase | - |
| YPO_RS00055 () | 1110..1889 | + | 780 | WP_001297096.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
| YPO_RS00060 () | 1956..2204 | - | 249 | Protein_2 | IS21 family transposase | - |
| YPO_RS00065 () | 2307..2951 | + | 645 | Protein_3 | IS3 family transposase | - |
| YPO_RS00070 () | 3014..3406 | - | 393 | WP_002213403.1 | type III secretion system chaperone SycE/YerA | - |
| YPO_RS00075 () | 3600..4259 | + | 660 | WP_002229754.1 | type III secretion system effector GTPase activator YopE | - |
| YPO_RS00080 () | 4399..4698 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YPO_RS00085 () | 4691..4933 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| YPO_RS00090 () | 5099..5391 | - | 293 | Protein_8 | IS6 family transposase | - |
| YPO_RS00095 () | 5477..5650 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| YPO_RS00100 () | 5799..6035 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| YPO_RS00105 () | 6195..7160 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YPO_RS00110 () | 7157..8323 | - | 1167 | WP_002220902.1 | plasmid-partitioning protein SopA | - |
| YPO_RS00115 () | 9083..10228 | - | 1146 | Protein_13 | IS3 family transposase | - |
| YPO_RS00120 () | 10335..10964 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| YPO_RS00125 () | 11110..11403 | - | 294 | Protein_15 | IS3 family transposase | - |
| YPO_RS00130 () | 11562..12110 | - | 549 | WP_002213007.1 | type III secretion system effector YopK | - |
| YPO_RS00135 () | 12610..13578 | + | 969 | WP_002213006.1 | T3SS effector cysteine protease YopT | - |
| YPO_RS00140 () | 13578..13976 | + | 399 | WP_002213004.1 | type III secretion system chaperone SycT | - |
| YPO_RS00145 () | 14382..14663 | + | 282 | Protein_19 | DDE-type integrase/transposase/recombinase | - |
| YPO_RS00150 () | 14681..15100 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| YPO_RS00155 () | 15628..15846 | - | 219 | Protein_21 | IS6 family transposase | - |
| YPO_RS00160 () | 15849..16094 | + | 246 | WP_116442925.1 | transposase | - |
| YPO_RS00165 () | 15976..16293 | + | 318 | Protein_23 | transposase | - |
| YPO_RS00170 () | 16336..17565 | - | 1230 | WP_002229779.1 | type III secretion system effector YopM | - |
| YPO_RS00175 () | 17959..18168 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| YPO_RS00180 () | 18189..18826 | + | 638 | Protein_26 | IS6 family transposase | - |
| YPO_RS00185 () | 19294..20214 | - | 921 | WP_002212987.1 | type III secretion system translocon subunit YopD | - |
| YPO_RS00190 () | 20233..21438 | - | 1206 | WP_002212985.1 | type III secretion system translocon subunit YopB | - |
| YPO_RS00195 () | 21416..21922 | - | 507 | WP_002222758.1 | type III secretion system chaperone SycD/LcrH | - |
| YPO_RS00200 () | 21935..22915 | - | 981 | WP_002212981.1 | type III secretion system needle tip protein LcrV | - |
| YPO_RS00205 () | 22917..23204 | - | 288 | WP_002212973.1 | type III secretion system chaperone LcrG | - |
| YPO_RS00210 () | 23246..23686 | - | 441 | WP_002220918.1 | type III secretion system chaperone LcrR | - |
| YPO_RS00215 () | 23683..25797 | - | 2115 | WP_002212971.1 | SctV family type III secretion system export apparatus subunit LcrD | - |
| YPO_RS00220 () | 25784..26128 | - | 345 | WP_002229791.1 | type III secretion system chaperone YscY | - |
| YPO_RS00225 () | 26125..26493 | - | 369 | WP_002212969.1 | type III secretion system protein YscX | - |
| YPO_RS00230 () | 26490..26861 | - | 372 | WP_002229794.1 | type III secretion chaperone SycN | - |
| YPO_RS00235 () | 26848..27126 | - | 279 | WP_002212965.1 | type III secretion system gatekeeper subunit TyeA | - |
| YPO_RS00240 () | 27107..27988 | - | 882 | WP_002212958.1 | SctW family type III secretion system gatekeeper subunit YopN | - |
| YPO_RS00245 () | 28186..29505 | + | 1320 | WP_002212955.1 | SctN family type III secretion system ATPase YscN | - |
| YPO_RS00250 () | 29502..29966 | + | 465 | WP_002212952.1 | type III secretion system central stalk protein YscO | - |
| YPO_RS00255 () | 29966..31333 | + | 1368 | WP_002212950.1 | type III secretion system needle length determinant YscP | - |
| YPO_RS00260 () | 31330..32253 | + | 924 | WP_002212948.1 | SctQ family type III secretion system cytoplasmic ring protein YscQ | - |
| YPO_RS00265 () | 32250..32903 | + | 654 | WP_002212947.1 | SctR family type III secretion system export apparatus subunit YscR | - |
| YPO_RS00270 () | 32905..33171 | + | 267 | WP_002212945.1 | SctS family type III secretion system export apparatus subunit YscS | - |
| YPO_RS00275 () | 33168..33953 | + | 786 | WP_002212938.1 | SctT family type III secretion system export apparatus subunit YscT | - |
| YPO_RS00280 () | 33953..35017 | + | 1065 | WP_002212936.1 | type III secretion system export apparatus switch protein YscU | - |
| YPO_RS00285 () | 35593..35988 | + | 396 | WP_002222527.1 | type III secretion system pilotin YscW | - |
| YPO_RS00290 () | 36112..36927 | + | 816 | WP_002212931.1 | virulence regulon transcriptional activator VirF | - |
| YPO_RS00295 () | 37006..37104 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| YPO_RS00300 () | 37330..37743 | + | 414 | WP_002212925.1 | type III secretion system chaperone YscB | - |
| YPO_RS00305 () | 37749..39572 | + | 1824 | WP_002212923.1 | SctC family type III secretion system outer membrane ring subunit YscC | - |
| YPO_RS00310 () | 39569..40828 | + | 1260 | WP_002212919.1 | SctD family type III secretion system inner membrane ring subunit YscD | - |
| YPO_RS00315 () | 40825..41025 | + | 201 | WP_002212917.1 | type III secretion system co-chaperone YscE | - |
| YPO_RS00320 () | 41026..41289 | + | 264 | WP_002212916.1 | type III secretion system needle filament protein YscF | - |
| YPO_RS00325 () | 41291..41638 | + | 348 | WP_002229801.1 | type III secretion system chaperone YscG | - |
| YPO_RS00330 () | 41635..42132 | + | 498 | WP_002212915.1 | T3SS polymerization control protein YopR | - |
| YPO_RS00335 () | 42133..42480 | + | 348 | WP_002212914.1 | SctI family type III secretion system inner rod subunit LcrO | - |
| YPO_RS00340 () | 42487..43221 | + | 735 | WP_002212912.1 | SctJ family type III secretion inner membrane ring lipoprotein YscJ | - |
| YPO_RS00345 () | 43221..43850 | + | 630 | WP_002361471.1 | SctK family type III secretion system sorting platform protein YscK | - |
| YPO_RS00350 () | 43796..44461 | + | 666 | WP_010981371.1 | SctL family type III secretion system stator protein YscL | - |
| YPO_RS00355 () | 44686..45033 | + | 348 | WP_002212907.1 | type III secretion system exported negative regulator LcrQ/YscM1 | - |
| YPO_RS00360 () | 45581..46610 | + | 1030 | Protein_62 | IS3 family transposase | - |
| YPO_RS00365 () | 46629..46901 | + | 273 | Protein_63 | transposase | - |
| YPO_RS00370 () | 47122..48528 | - | 1407 | WP_002213278.1 | T3SS effector protein-tyrosine-phosphatase YopH | - |
| YPO_RS00375 () | 48811..49044 | - | 234 | Protein_65 | transposase domain-containing protein | - |
| YPO_RS00380 () | 49047..49625 | + | 579 | Protein_66 | IS3 family transposase | - |
| YPO_RS00385 () | 50211..51077 | - | 867 | WP_002213287.1 | type III secretion system effector acetyltransferase YopJ | - |
| YPO_RS00390 () | 51473..53671 | - | 2199 | WP_002213290.1 | type III secretion system effector protein kinase YopO/YpkA | - |
| YPO_RS00395 () | 53679..54128 | - | 450 | WP_002229809.1 | type III secretion system chaperone | - |
| YPO_RS00400 () | 54384..54696 | - | 313 | Protein_70 | DDE-type integrase/transposase/recombinase | - |
| YPO_RS00405 () | 54874..55113 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| YPO_RS00410 () | 56291..57169 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| YPO_RS00415 () | 57150..57224 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| YPO_RS00420 () | 57466..57720 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| YPO_RS00425 () | 57858..58106 | - | 249 | WP_002233137.1 | phospholipase | - |
| YPO_RS00430 () | 58232..58540 | + | 309 | Protein_76 | DDE-type integrase/transposase/recombinase | - |
| YPO_RS00435 () | 58523..58930 | - | 408 | WP_002213294.1 | IS3 family transposase | - |
| YPO_RS00440 () | 58954..59271 | - | 318 | WP_002213244.1 | transposase | - |
| YPO_RS00445 () | 59443..59901 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| YPO_RS00450 () | 59970..60239 | + | 270 | WP_042469136.1 | transposase | - |
| YPO_RS21765 () | 60337..60495 | - | 159 | Protein_81 | EamA family transporter | - |
| YPO_RS00455 () | 60565..61868 | - | 1304 | Protein_82 | trimeric autotransporter adhesin YadA | - |
| YPO_RS00460 () | 62468..62818 | + | 351 | Protein_83 | IS3 family transposase | - |
| YPO_RS00465 () | 62851..65166 | - | 2316 | WP_002213256.1 | Tn3 family transposase | - |
| YPO_RS00470 () | 65330..65881 | + | 552 | WP_002213258.1 | recombinase family protein | - |
| YPO_RS00475 () | 65900..66364 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| YPO_RS00480 () | 66503..66832 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| YPO_RS00485 () | 66932..68031 | + | 1100 | WP_086016640.1 | IS3-like element ISYpe1 family transposase | - |
| YPO_RS00490 () | 68179..68604 | - | 426 | WP_002213267.1 | type III secretion system chaperone SycH | - |
| YPO_RS00495 () | 68980..69378 | - | 399 | Protein_90 | ATP-binding protein | - |
| YPO_RS00500 () | 69378..70304 | - | 927 | Protein_91 | IS21 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|