SecReT4

T4SS
References

T4SS ID	73
Strain	Plasmid QKH54
Replicon	plasmid QKH54 [Browse all T4SS(s) in this replicon]
Accession	NC_008055
Location	25373..36929; 62437..65326
Name	Trb
Function	NA
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	1	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	1	1	1	1	1

The information of T4SS components from NC_008055
Region 1: 25373..36929

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pQKH54_26 (hcfA)	20439..21335 [-], 897	108524601	putative alpha-ketoglutarate-dependent taurine dioxygenase
2	pQKH54_27 (hcfR)	21459..22487 [+], 1029	108524602	putative regulator
3	pQKH54_28 (trfA1)	23120..24241 [-], 1122	108524603	trans-acting replication factor A
4	pQKH54_29 (ssb)	24282..24641 [-], 360	108524604	single-stranded DNA binding protein
5	pQKH54_30 (trbA)	24803..25120 [+], 318	108524605	TrbA repressor protein
6	pQKH54_31 (trbB)	25373..26344 [+], 972	108524606	TrbB mating pair formation protein	TrbB
7	pQKH54_32 (trbC)	26364..26771 [+], 408	108524607	TrbC prepillin	TrbC
8	pQKH54_33 (trbD)	26774..27085 [+], 312	108524608	TrbD mating pair formation protein	TrbD
9	pQKH54_34 (trbE)	27082..29640 [+], 2559	108524609	TrbE mating pair formation protein	TrbE
10	pQKH54_35 (trbF)	29637..30356 [+], 720	108524610	TrbF mating pair formation protein	TrbF
11	pQKH54_36 (trbG)	30368..31258 [+], 891	108524611	TrbG mating pair formation protein	TrbG
12	pQKH54_37 (trbH)	31262..31729 [+], 468	108524612	TrbH mating pair formation protein	TrbH
13	pQKH54_38 (trbI)	31736..33154 [+], 1419	108524613	TrbI mating pair formation protein	TrbI
14	pQKH54_39 (trbJ)	33177..33962 [+], 786	108524614	TrbJ mating pair formation protein	TrbJ
15	pQKH54_40 (trbK)	33974..34210 [+], 237	108524615	TrbK	TrbK
16	pQKH54_41 (trbL)	34218..35954 [+], 1737	108524616	putative topoisomerase	TrbL
17	pQKH54_42 (trbQ)	35967..36287 [+], 321	108524617	hypothetical protein
18	pQKH54_43 (trbN)	36297..36929 [+], 633	108524618	putative muramidase	TrbN
19	pQKH54_44 (trbR)	36929..37399 [+], 471	108524619	hypothetical protein
20	pQKH54_45 (trbP)	37403..38140 [+], 738	108524620	TrbP mating pair formation protein
21	pQKH54_46 (trbS)	38150..38395 [+], 246	108524621	hypothetical protein
22	pQKH54_47 (trbT)	38413..39075 [+], 663	108524622	hypothetical protein
23	pQKH54_48 (trbU)	39086..39412 [+], 327	108524623	hypothetical protein
24	pQKH54_49 (trbV)	39435..39704 [+], 270	108524624	hypothetical protein
25	pQKH54_50 (tnpA-1)	39804..40832 [+], 1029	108524625	transposase
26	pQKH54_51 (trbW)	40871..41317 [+], 447	108524626	hypothetical protein

Region 2: 62437..65326

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pQKH54_72 (traD)	59843..60223 [-], 381	108524643	TraD protein
2	pQKH54_73 (traE)	60234..62426 [-], 2193	108524644	TraE DNA topoisomerase
3	pQKH54_74 (traF)	62437..62976 [-], 540	108524645	TraF maturation peptidase	TraF
4	pQKH54_75 (traQ)	62973..63413 [-], 441	108524646	TraQ hypothetical protein
5	pQKH54_76 (traG)	63410..65326 [-], 1917	108524647	TraG coupling protein	TraG
6	pQKH54_77 (traI)	65323..67731 [-], 2409	108524648	TraI DNA relaxase
7	pQKH54_78 (traH)	65634..66053 [-], 420	108524649	TraH relaxosome stabilising protein
8	pQKH54_79 (traX)	67728..67769 [-], 42	108524650	TraX coupling peptide
9	pQKH54_80 (traJ)	67766..68122 [-], 357	108524651	TraJ oriT-binding protein
10	pQKH54_81 (traK)	68469..68897 [+], 429	108524652	TraK oriT-binding protein
11	pQKH54_82 (traL)	68897..69622 [+], 726	108524653	TraL protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Haines AS; Akhtar P; Stephens ER; Jones K; Thomas CM; Perkins CD; Williams JR; Day MJ; Fry JC (2006). Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype. Microbiology. 152(Pt 9):2689-701. [PudMed:16946264]