SecReT4

T4SS
References

T4SS ID	724
Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_015379
Location	2431509..2453395
Name	Tfc
Function	NA
Classification	Type IVC; Type G
This T4SS is identified in this study.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	0	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	0

The information of T4SS components from NC_015379

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	PSEBR_RS10585	2427658..2428524 [+], 867	503458070	DNA/RNA non-specific endonuclease
2	PSEBR_RS10590	2428591..2428863 [-], 273	503458071	hypothetical protein
3	PSEBR_RS10595	2429114..2430931 [-], 1818	503458072	TraI domain-containing protein
4	PSEBR_RS30650	2431135..2431506 [+], 372	754522314	DUF3742 family protein
5	PSEBR_RS10605	2431509..2433014 [-], 1506	503458073	conjugal transfer protein TraG	Tfc19
6	PSEBR_RS10615	2433361..2434770 [-], 1410	503458075	integrating conjugative element protein	Tfc22
7	PSEBR_RS10620	2434767..2435720 [-], 954	503458076	TIGR03756 family integrating conjugative element protein	Tfc23
8	PSEBR_RS10625	2436020..2436790 [+], 771	503458077	class I SAM-dependent methyltransferase
9	PSEBR_RS10630 (radC)	2436972..2437463 [-], 492	503458078	DNA repair protein RadC
10	PSEBR_RS30655	2437806..2437991 [+], 186	pseudogene	transposase domain-containing protein
11	PSEBR_RS10635	2438000..2438635 [+], 636	503458079	hypothetical protein
12	PSEBR_RS10640	2438852..2439376 [+], 525	503458080	hypothetical protein
13	PSEBR_RS10645	2439770..2442607 [-], 2838	503458081	conjugative transfer ATPase	Tfc16
14	PSEBR_RS10650	2442607..2443008 [-], 402	1807080512	TIGR03751 family conjugal transfer lipoprotein
15	PSEBR_RS10655	2443010..2444446 [-], 1437	503458083	TIGR03752 family integrating conjugative element protein	Tfc14
16	PSEBR_RS10660	2444436..2445323 [-], 888	503458084	TIGR03749 family integrating conjugative element protein	Tfc13
17	PSEBR_RS30660	2445320..2446003 [-], 684	503458085	TIGR03746 family integrating conjugative element protein	Tfc12
18	PSEBR_RS30665	2446000..2446395 [-], 396	503458086	TIGR03750 family conjugal transfer protein	Tfc11
19	PSEBR_RS10670	2446408..2446767 [-], 360	503458087	TIGR03745 family integrating conjugative element membrane protein
20	PSEBR_RS10675	2446788..2447021 [-], 234	503458088	TIGR03758 family integrating conjugative element protein
21	PSEBR_RS10680	2447018..2447356 [-], 339	503458089	hypothetical protein	Tfc9
22	PSEBR_RS30670	2447492..2447956 [-], 465	503458090	hypothetical protein
23	PSEBR_RS10685	2448034..2448783 [-], 750	503458091	TIGR03747 family integrating conjugative element membrane protein	Tfc8
24	PSEBR_RS10690 (traD)	2448780..2450909 [-], 2130	503458092	type IV conjugative transfer system coupling protein TraD	Tfc6
25	PSEBR_RS10695	2450912..2451340 [-], 429	503458093	integrating conjugative element protein	Tfc5
26	PSEBR_RS10700	2451499..2452218 [-], 720	503458094	TIGR03759 family integrating conjugative element protein	Tfc3
27	PSEBR_RS10705	2452200..2452871 [-], 672	503458095	hypothetical protein
28	PSEBR_RS10710	2452868..2453395 [-], 528	503458096	PilL N-terminal domain-containing protein	Tfc2
29	PSEBR_RS10715	2453562..2453864 [-], 303	503458097	hypothetical protein
30	PSEBR_RS10720	2453994..2454479 [-], 486	503458098	DUF3577 domain-containing protein
31	PSEBR_RS10725	2454613..2455020 [-], 408	503458099	hypothetical protein
32	PSEBR_RS10735	2455860..2457875 [-], 2016	503458100	DNA topoisomerase III

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_015379