T4SS ID	716
Strain	Tolumonas auensis DSM 9187
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_012691
Location	2654915..2676431
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	1

The information of T4SS components from NC_012691
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Tola_2425	2650255..2651031 [+], 777	237809166	hypothetical protein
2	Tola_2426	2651101..2652915 [-], 1815	237809167	UvrD/REP helicase
3	Tola_2427	2652902..2654689 [-], 1788	237809168	hypothetical protein
4	Tola_2428	2654915..2655478 [+], 564	237809169	hypothetical protein	Tfc2
5	Tola_2429	2655475..2656134 [+], 660	237809170	hypothetical protein
6	Tola_2430	2656147..2656875 [+], 729	237809171	putative secreted protein	Tfc3
7	Tola_2431	2656857..2657447 [+], 591	237809172	Lytic transglycosylase catalytic	Tfc4
8	Tola_2432	2657444..2657989 [+], 546	237809173	putative secreted protein	Tfc5
9	Tola_2433	2657994..2660183 [+], 2190	237809174	hypothetical protein	Tfc6
10	Tola_2434	2660180..2660929 [+], 750	237809175	hypothetical protein	Tfc8
11	Tola_2435	2660930..2662300 [-], 1371	237809176	hypothetical protein
12	Tola_2436	2662464..2662841 [+], 378	237809177	hypothetical protein	Tfc9
13	Tola_2437	2662838..2663071 [+], 234	237809178	hypothetical protein
14	Tola_2438	2663088..2663450 [+], 363	237809179	hypothetical protein
15	Tola_2439	2663461..2663859 [+], 399	237809180	hypothetical protein	Tfc11
16	Tola_2440	2663856..2664536 [+], 681	237809181	putative secreted protein	Tfc12
17	Tola_2441	2664533..2665435 [+], 903	237809182	putative secreted protein	Tfc13
18	Tola_2442	2665425..2666834 [+], 1410	237809183	putative secreted protein	Tfc14
19	Tola_2443	2666815..2667249 [+], 435	237809184	putative secreted protein	Tfc15
20	Tola_2444	2667249..2670125 [+], 2877	237809185	hypothetical protein	Tfc16
21	Tola_2445	2670141..2670899 [+], 759	237809186	DsbA-thioredoxin family protein
22	Tola_2446	2671071..2671577 [+], 507	237809187	DNA repair protein RadC
23	Tola_2447	2671713..2672213 [+], 501	237809188	hypothetical protein	Tfc24
24	Tola_2448	2672210..2673142 [+], 933	237809189	hypothetical protein	Tfc23
25	Tola_2449	2673153..2674550 [+], 1398	237809190	hypothetical protein	Tfc22
26	Tola_2450	2674547..2674897 [+], 351	237809191	hypothetical protein
27	Tola_2451	2674911..2676431 [+], 1521	237809192	hypothetical protein	Tfc19
28	Tola_2452	2676442..2676807 [-], 366	237809193	hypothetical protein
29	Tola_2453	2676835..2677293 [-], 459	237809194	hypothetical protein
30	Tola_2454	2677293..2677610 [-], 318	237809195	transcriptional regulator, AbrB family
31	Tola_2455	2677917..2679773 [+], 1857	237809196	Relaxase
32	Tola_2457	2680241..2681149 [-], 909	237809197	carbamate kinase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICETauDSM9187-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation