T4SS ID	710
Strain	Herminiimonas arsenicoxydans
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_009138
Location	2010192..2036064
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	1

The information of T4SS components from NC_009138
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	HEAR1998	2006405..2008171 [-], 1767	134095190	DNA helicase II
2	HEAR1999	2008206..2009990 [-], 1785	134095191	hypothetical protein
3	HEAR2000	2010192..2010812 [+], 621	134095192	hypothetical protein	Tfc2
4	HEAR2001	2010809..2011459 [+], 651	134095193	hypothetical protein
5	HEAR2002	2011474..2012199 [+], 726	134095194	signal peptide	Tfc3
6	HEAR2003	2012181..2012771 [+], 591	134095195	signal peptide	Tfc4
7	HEAR2004	2012768..2013316 [+], 549	134095196	signal peptide	Tfc5
8	HEAR2005	2013321..2015507 [+], 2187	134095197	hypothetical protein	Tfc6
9	HEAR2006	2015504..2016253 [+], 750	134095198	hypothetical protein	Tfc8
10	HEAR2007	2016283..2018907 [-], 2625	134095199	hypothetical protein
11	HEAR2008	2019008..2020060 [-], 1053	134095200	hypothetical protein
12	HEAR2010	2020212..2020886 [-], 675	134095202	hypothetical protein
13	HEAR2011	2020949..2021893 [+], 945	134095203	hypothetical protein
14	HEAR2012	2022030..2022410 [+], 381	134095204	signal peptide	Tfc9
15	HEAR2013	2022407..2022640 [+], 234	134095205	hypothetical protein
16	HEAR2014	2022657..2023016 [+], 360	134095206	hypothetical protein
17	HEAR2015	2023029..2023439 [+], 411	134095207	hypothetical protein	Tfc11
18	HEAR2016	2023436..2024125 [+], 690	134095208	hypothetical protein	Tfc12
19	HEAR2017	2024122..2025039 [+], 918	134095209	signal peptide	Tfc13
20	HEAR2018	2025029..2026459 [+], 1431	134095210	signal peptide	Tfc14
21	HEAR2019	2026440..2026880 [+], 441	134095211	signal peptide	Tfc15
22	HEAR2020	2027132..2029762 [+], 2631	134095212	hypothetical protein	Tfc16
23	HEAR2021	2029776..2030540 [+], 765	134095213	hypothetical protein
24	HEAR2022	2030725..2031219 [+], 495	134095214	RadC family DNA repair protein
25	HEAR2023	2031378..2031824 [+], 447	134095215	hypothetical protein	Tfc24
26	HEAR2024	2031821..2032768 [+], 948	134095216	hypothetical protein	Tfc23
27	HEAR2025	2032931..2034175 [+], 1245	134095217	signal peptide	Tfc22
28	HEAR2026	2034172..2034531 [+], 360	134095218	hypothetical protein
29	HEAR2027	2034547..2036064 [+], 1518	134095219	hypothetical protein	Tfc19
30	HEAR2028	2036078..2036455 [-], 378	134095220	signal peptide
31	HEAR2029	2036483..2036941 [-], 459	134095221	hypothetical protein
32	HEAR2030	2036941..2037258 [-], 318	134095222	protease; htrA suppressor protein
33	HEAR2031	2037564..2039408 [+], 1845	134095223	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICEHaeULPAs1-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation