T4SS ID	708
Strain	Yersinia enterocolitica subsp. enterocolitica 8081
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_008800
Location	3777818..3819146
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	1

The information of T4SS components from NC_008800
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	YE3462	3775095..3776192 [+], 1098	123443652	hypothetical protein
2	YE3463	3776189..3777172 [+], 984	123443653	hypothetical protein
3	YE3464	3777495..3777758 [+], 264	123443654	hypothetical protein
4	YE3465	3777818..3779338 [-], 1521	123443655	hypothetical protein	Tfc19
5	YE3466	3779338..3780744 [-], 1407	123443656	hypothetical protein	Tfc22
6	YE3467	3780765..3781718 [-], 954	123443657	hypothetical protein	Tfc23
7	YE3468	3781715..3782068 [-], 354	123443658	hypothetical protein	Tfc24
8	YE3472 (arsR2)	3783946..3784299 [+], 354	123443659	DNA-binding transcriptional repressor ArsR
9	YE3472A (arsD)	3784346..3784708 [+], 363	123443660	arsenical resistance operon trans-acting repressor
10	YE3473 (arsA2)	3784726..3786477 [+], 1752	123443661	arsenical pump-driving ATPase
11	YE3474 (arsB2)	3786526..3787815 [+], 1290	123443662	arsenical pump membrane protein
12	YE3475 (arsC2)	3787828..3788253 [+], 426	123443663	arsenate reductase
13	YE3476 (tpn1330)	3788299..3789492 [-], 1194	123443664	transposase for IS1330
14	YE3477 (arsH)	3789694..3790404 [-], 711	123443665	putative arsenic resistance protein
15	YE3478	3790536..3790829 [-], 294	123443666	hypothetical protein
16	YE3479	3790936..3792069 [+], 1134	123443667	putative membrane transport protein
17	YE3480 (ccdB)	3792208..3792522 [-], 315	123443668	cytotoxic protein
18	YE3481 (ccdA)	3792525..3792761 [-], 237	123443669	gyrase inhibitor antitoxin
19	YE3482	3793238..3795880 [-], 2643	123443670	hypothetical protein	Tfc16
20	YE3483	3796042..3796446 [-], 405	123443671	putative lipoprotein	Tfc15
21	YE3484	3796456..3797913 [-], 1458	123443672	hypothetical protein	Tfc14
22	YE3485	3797961..3798827 [-], 867	123443673	hypothetical protein	Tfc13
23	YE3486	3798824..3799477 [-], 654	123443674	hypothetical protein	Tfc12
24	YE3487	3799474..3799848 [-], 375	123443675	putative inner membrane protein	Tfc11
25	YE3488	3799858..3800208 [-], 351	123443676	hypothetical protein
26	YE3489	3800224..3800472 [-], 249	123443677	hypothetical protein
27	YE3490	3800469..3800777 [-], 309	123443678	hypothetical protein	Tfc9
28	YE3492	3801682..3802434 [-], 753	123443679	putative inner membrane protein	Tfc8
29	YE3493	3802434..3804554 [-], 2121	123443680	TraG-family protein	Tfc6
30	YE3494	3804740..3805234 [-], 495	123443681	hypothetical protein	Tfc5
31	YE3494A	3805258..3805806 [-], 549	123443682	hypothetical protein	Tfc4
32	YE3495	3805875..3806642 [-], 768	123443683	hypothetical protein	Tfc3
33	YE3495A	3806785..3807132 [-], 348	123443684	hypothetical protein
34	YE3496	3807111..3807365 [-], 255	123443685	hypothetical protein
35	YE3496A	3807520..3807876 [+], 357	123443686	putative DNA-binding protein
36	YE3497	3808031..3808951 [-], 921	123443687	putative transposase
37	YE3498	3809045..3810322 [-], 1278	123443688	putative type IV pilus protein
38	YE3499	3810326..3810994 [-], 669	123443689	type IV prepilin peptidase
39	YE3500	3810991..3811578 [-], 588	123443690	putative type IV prepilin
40	YE3501	3811593..3812702 [-], 1110	123443691	type IV pilus integral membrane protein
41	YE3502	3812695..3814248 [-], 1554	123443692	putative type IV pilus protein
42	YE3502A	3814257..3814736 [-], 480	123443693	putative type IV pilus protein
43	YE3503	3814723..3816030 [-], 1308	123443694	putative type IV pilus protein
44	YE3504	3816033..3817721 [-], 1689	123443695	putative type IV pilus operon lipoprotein
45	YE3505	3817733..3818170 [-], 438	123443696	putative type IV pilus operon exported poprotein
46	YE3506	3818172..3819146 [-], 975	123443697	putative type IV pilus operon lipoprotein	Tfc2
47	YE3507	3819341..3819772 [-], 432	123443698	hypothetical protein
48	YE3508	3819884..3820201 [-], 318	123443699	hypothetical protein
49	YE3509	3820501..3821043 [-], 543	123443700	hypothetical protein
50	YE3510	3821333..3822091 [-], 759	123443701	hypothetical protein
51	YE3511	3822260..3823462 [-], 1203	123443702	hypothetical protein
52	YE3512	3823568..3824137 [-], 570	123443703	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) YAPI(ye) and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation