T4SS ID	684
Strain	Xanthomonas campestris pv. vesicatoria str. 85-10
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_007508
Location	2689317..2709471
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	1

The information of T4SS components from NC_007508
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	XCV2355	2684884..2685381 [+], 498	78047911	hypothetical protein
2	XCV2356	2685446..2687278 [-], 1833	78047912	hypothetical protein
3	XCV2357	2687592..2688218 [+], 627	78047913	hypothetical protein
4	XCV2358	2688231..2688848 [+], 618	78047914	hypothetical protein
5	XCV2359	2688948..2689310 [+], 363	78047915	hypothetical protein
6	XCV2360	2689317..2690840 [-], 1524	78047916	hypothetical protein	Tfc19
7	XCV2361	2690855..2691226 [-], 372	78047917	hypothetical protein
8	XCV2362	2691223..2692620 [-], 1398	78047918	hypothetical protein	Tfc22
9	XCV2363	2692630..2693577 [-], 948	78047919	hypothetical protein	Tfc23
10	XCV2364	2693574..2694020 [-], 447	78047920	hypothetical protein	Tfc24
11	XCV2365	2694183..2694677 [-], 495	78047921	RadC family DNA repair protein
12	XCV2366	2694859..2695644 [-], 786	78047922	hypothetical protein
13	XCV2367	2695658..2698525 [-], 2868	78047923	hypothetical protein	Tfc16
14	XCV2368	2698525..2698965 [-], 441	78047924	hypothetical protein	Tfc15
15	XCV2369	2698946..2700376 [-], 1431	78047925	hypothetical protein	Tfc14
16	XCV2370	2700366..2701280 [-], 915	78047926	hypothetical protein	Tfc13
17	XCV2371	2701277..2701969 [-], 693	78047927	hypothetical protein	Tfc12
18	XCV2372	2701966..2702364 [-], 399	78047928	hypothetical protein	Tfc11
19	XCV2373	2702377..2702733 [-], 357	78047929	hypothetical protein
20	XCV2374	2702751..2702984 [-], 234	78047930	hypothetical protein
21	XCV2375	2702981..2703361 [-], 381	78047931	hypothetical protein	Tfc9
22	XCV2376	2703460..2704209 [-], 750	78047932	hypothetical protein	Tfc8
23	XCV2377	2704206..2706398 [-], 2193	78047933	hypothetical protein	Tfc6
24	XCV2378	2706403..2706942 [-], 540	78047934	hypothetical protein	Tfc5
25	XCV2379	2706939..2707529 [-], 591	78047935	lytic transglycosylase precursor	Tfc4
26	XCV2380	2707511..2708236 [-], 726	78047936	hypothetical protein	Tfc3
27	XCV2381	2708249..2708818 [-], 570	78047937	hypothetical protein
28	XCV2382	2708872..2709471 [-], 600	78047938	hypothetical protein	Tfc2
29	XCV2383	2709660..2710748 [-], 1089	78047939	hypothetical protein
30	XCV2384	2710765..2712960 [-], 2196	78047940	cytochrome precursor
31	XCV2385	2713288..2713974 [-], 687	78047941	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICEXcaVe85-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation