T4SS ID	683
Strain	Xanthomonas campestris pv. campestris str. 8004
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_007086
Location	2439093..2459267
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	1

The information of T4SS components from NC_007086
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	XC_2020	2435115..2437043 [-], 1929	66768339	hypothetical protein
2	XC_2021	2437359..2437985 [+], 627	66768340	hypothetical protein
3	XC_2022	2437998..2438630 [+], 633	66768341	hypothetical protein
4	XC_2023	2438716..2439081 [+], 366	66768342	hypothetical protein
5	XC_2024	2439093..2440613 [-], 1521	66768343	hypothetical protein	Tfc19
6	XC_2025	2440629..2440976 [-], 348	66768344	hypothetical protein
7	XC_2026	2440973..2442367 [-], 1395	66768345	hypothetical protein	Tfc22
8	XC_2027	2442378..2443343 [-], 966	66768346	hypothetical protein	Tfc23
9	XC_2028	2443340..2443786 [-], 447	66768347	hypothetical protein	Tfc24
10	XC_2029	2443947..2444441 [-], 495	66768348	DNA repair protein RadC
11	XC_2030	2444626..2445390 [-], 765	66768349	hypothetical protein
12	XC_2031	2445406..2448270 [-], 2865	66768350	Type IV secretory pathway, VirB4 components	Tfc16
13	XC_2032	2448270..2448713 [-], 444	66768351	hypothetical protein	Tfc15
14	XC_2033	2448694..2450124 [-], 1431	66768352	hypothetical protein	Tfc14
15	XC_2034	2450114..2451040 [-], 927	77761186	hypothetical protein	Tfc13
16	XC_2035	2451037..2451726 [-], 690	66768354	hypothetical protein	Tfc12
17	XC_2036	2451723..2452133 [-], 411	66768355	hypothetical protein	Tfc11
18	XC_2037	2452144..2452461 [-], 318	66768356	hypothetical protein
19	XC_2038	2452750..2453130 [-], 381	66768357	hypothetical protein	Tfc9
20	XC_2039	2453229..2453978 [-], 750	66768358	hypothetical protein	Tfc8
21	XC_2040	2453975..2456164 [-], 2190	66768359	VirD4, Type IV secretory pathway, VirD4 components	Tfc6
22	XC_2041	2456169..2456717 [-], 549	66768360	hypothetical protein	Tfc5
23	XC_2042	2456714..2457295 [-], 582	66768361	hypothetical protein	Tfc4
24	XC_2043	2457301..2458023 [-], 723	66768362	hypothetical protein	Tfc3
25	XC_2044	2458039..2458686 [-], 648	66768363	hypothetical protein
26	XC_2045	2458683..2459267 [-], 585	66768364	hypothetical protein	Tfc2
27	XC_2046	2459407..2461713 [-], 2307	66768365	plasmid-like protein
28	XC_2047	2461828..2462163 [-], 336	66768366	hypothetical protein
29	XC_2048	2462222..2462404 [-], 183	66768367	hypothetical protein
30	XC_2049	2462586..2463695 [-], 1110	66768368	plasmid-like protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICEXcaCa8004-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation