T4SS ID	681
Strain	Pseudomonas fluorescens Pf-5
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_004129
Location	5423444..5446316
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	0	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	1

The information of T4SS components from NC_004129
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	PFL_RS23805 (umuD)	5420936..5421361 [+], 426	499375367	translesion error-prone DNA polymerase V autoproteolytic subunit
2	PFL_RS23810 (umuC)	5421354..5422625 [+], 1272	499375368	translesion error-prone DNA polymerase V subunit UmuC
3	PFL_RS23815	5422735..5423430 [+], 696	499375369	hypothetical protein
4	PFL_RS23820	5423444..5424187 [+], 744	499375370	TIGR03759 family integrating conjugative element protein	Tfc3
5	PFL_RS23825	5424172..5424723 [+], 552	499375371	transglycosylase SLT domain-containing protein	Tfc4
6	PFL_RS23830	5424720..5425226 [+], 507	499375372	integrating conjugative element protein	Tfc5
7	PFL_RS23840 (traD)	5425475..5427691 [+], 2217	499375373	type IV conjugative transfer system coupling protein TraD	Tfc6
8	PFL_RS23845	5427701..5428450 [+], 750	499375374	TIGR03747 family integrating conjugative element membrane protein	Tfc8
9	PFL_RS23850	5428460..5429920 [+], 1461	499375375	UvrD-helicase domain-containing protein
10	PFL_RS23855	5429936..5430238 [+], 303	499375376	hypothetical protein
11	PFL_RS23860	5430500..5430811 [+], 312	1194654670	RAQPRD family integrative conjugative element protein
12	PFL_RS23865	5430808..5431047 [+], 240	499375378	TIGR03758 family integrating conjugative element protein
13	PFL_RS23870	5431062..5431400 [+], 339	499375379	TIGR03745 family integrating conjugative element membrane protein
14	PFL_RS23875	5431416..5431784 [+], 369	499375380	TIGR03750 family conjugal transfer protein	Tfc11
15	PFL_RS23880	5431796..5432440 [+], 645	499375381	TIGR03746 family integrating conjugative element protein	Tfc12
16	PFL_RS32210	5432437..5433348 [+], 912	499375382	TIGR03749 family integrating conjugative element protein	Tfc13
17	PFL_RS23890	5433332..5434828 [+], 1497	499375383	TIGR03752 family integrating conjugative element protein	Tfc14
18	PFL_RS23895	5434806..5435243 [+], 438	499375384	TIGR03751 family conjugal transfer lipoprotein	Tfc15
19	PFL_RS23900	5435245..5438169 [+], 2925	499375385	conjugative transfer ATPase	Tfc16
20	PFL_RS23905	5438166..5438471 [+], 306	499375386	hypothetical protein
21	PFL_RS23910	5438468..5439127 [+], 660	499375387	thioredoxin domain-containing protein
22	PFL_RS32215	5439350..5439766 [+], 417	1121458642	low affinity iron permease family protein
23	PFL_RS32220	5440033..5440408 [+], 376	pseudogene	hemerythrin domain-containing protein
24	PFL_RS23915	5441167..5441427 [+], 261	915398411	hypothetical protein
25	PFL_RS23920	5441688..5442116 [+], 429	499375388	TIGR03757 family integrating conjugative element protein	Tfc24
26	PFL_RS23925	5442113..5443051 [+], 939	499375389	TIGR03756 family integrating conjugative element protein	Tfc23
27	PFL_RS23930	5443072..5444424 [+], 1353	499375390	integrating conjugative element protein	Tfc22
28	PFL_RS23935	5444428..5444787 [+], 360	754145582	hypothetical protein
29	PFL_RS23940	5444784..5446316 [+], 1533	499375391	conjugal transfer protein TraG	Tfc19
30	PFL_RS31680	5446359..5446733 [-], 375	1675131263	DUF3742 family protein
31	PFL_RS23950	5446848..5447126 [+], 279	499375392	type II toxin-antitoxin system ParD family antitoxin
32	PFL_RS23955	5447123..5447488 [+], 366	499375393	type II toxin-antitoxin system RelE/ParE family toxin
33	PFL_RS32230	5448221..5448397 [-], 177	1169638111	DUF3606 domain-containing protein
34	PFL_RS32235	5449040..5449906 [+], 867	499375394	alpha/beta hydrolase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) PFGI-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Mavrodi DV; Loper JE; Paulsen IT; Thomashow LS (2009). Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5. BMC Microbiol. 9:08. [PudMed:19144133]