T4SS ID	669
Strain	Clostridium difficile 630
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_009089
Location	3897502..3909543
Name	Tra_Tn
Function	conjugation
Classification	Type IVD; Type GP
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	Orf13_Tn	Orf14_Tn	Orf15_Tn	Orf16_Tn	Orf17_Tn	Orf19_Tn	Orf21_Tn
Number	1	1	1	1	1	1	1

The information of T4SS components from NC_009089
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	CD630_33280	3892914..3893153 [-], 240	126700947	conjugative transposon protein
2	CD630_33290	3893150..3893572 [-], 423	126700948	RNA polymerase sigma factor Tn916-like,CTn6-Orf5
3	CD630_33300	3894170..3894526 [+], 357	126700949	HTH-type transcriptional regulator
4	CD630_33310	3894559..3895254 [-], 696	126700950	conjugative transposon protein
5	CD630_33320	3895434..3896003 [+], 570	400927531	TetR family transcriptional regulator
6	CD630_33330	3896015..3896260 [+], 246	126700952	conjugative transposon protein
7	CD630_33331	3896491..3896733 [+], 243	400927532	conjugative transposon protein
8	CD630_33340	3896730..3897200 [+], 471	126700954	transcriptional regulator
9	CD630_33350	3897502..3898410 [-], 909	126700955	conjugative transposon protein	Orf13_Tn
10	CD630_33360	3898427..3899431 [-], 1005	126700956	cell wall hydrolase	Orf14_Tn
11	CD630_33370	3899428..3901809 [-], 2382	126700957	membrane protein	Orf15_Tn
12	CD630_33380	3901806..3904259 [-], 2454	126700958	ATPase	Orf16_Tn
13	CD630_33390	3904243..3904635 [-], 393	126700959	conjugative transposon protein	Orf17_Tn
14	CD630_33400	3904725..3905222 [-], 498	126700960	antirestriction protein
15	CD630_33420	3905806..3906312 [-], 507	126700961	conjugative transposon protein
16	CD630_33421	3906498..3906719 [-], 222	126700962	conjugative transposon protein	Orf19_Tn
17	CD630_33430	3906771..3907751 [-], 981	126700963	replication initiation factor
18	CD630_33440	3908146..3909543 [-], 1398	126700964	cell-division FtsK/SpoIIIE-family protein Tn916-like, CTn6-Orf22	Orf21_Tn
19	CD630_33450	3909579..3909956 [-], 378	126700965	conjugative transposon protein
20	CD630_33460	3909978..3910292 [-], 315	126700966	conjugative transposon protein
21	CD630_33470	3910549..3911223 [+], 675	126700967	membrane protein
22	CD630_33480	3911224..3912117 [+], 894	126700968	hypothetical protein
23	CD630_33490 (bclA3)	3912316..3914301 [-], 1986	126700969	exosporium glycoprotein BclA3

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) CTn6 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Sebaihia M; Wren BW; Mullany P; Fairweather NF; Minton N; Stabler R; Thomson NR; Roberts AP; Cerdeno-Tarraga AM; Wang H; Holden MT; Wright A; Churcher C; Quail MA; Baker S; Bason N; Brooks K; Chillingworth T; Cronin A; Davis P; Dowd L; Fraser A; Feltwell T; Hance Z; Holroyd S; Jagels K; Moule S; Mungall K; Price C; Rabbinowitsch E; Sharp S; Simmonds M; Stevens K; Unwin L; Whithead S; Dupuy B; Dougan G; Barrell B; Parkhill J (2006). The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet. 38(7):779-86. [PudMed:16804543]