T4SS ID	668
Strain	Clostridium difficile 630
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_009089
Location	586451..599749
Name	Tra_Tn
Function	conjugation
Classification	Type IVD; Type GP
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	Orf13_Tn	Orf14_Tn	Orf15_Tn	Orf16_Tn	Orf17_Tn	Orf19_Tn	Orf21_Tn
Number	1	0	1	1	1	1	1

The information of T4SS components from NC_009089
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	CD630_04910	581655..582062 [+], 408	126698068	PTS system mannose/fructose/sorbose transporter subunit IIA
2	CD630_04920	582091..582564 [+], 474	126698069	PTS system mannose/fructose/sorbose transporter subunit IIB
3	CD630_04930	582611..583369 [+], 759	126698070	PTS system mannose/fructose/sorbose transporter subunit IIC
4	CD630_04940	583393..584232 [+], 840	126698071	PTS system mannose/fructose/sorbose transporter subunit IID
5	CD630_04960	585695..586009 [+], 315	126698072	conjugative transposon protein
6	CD630_04970	586031..586417 [+], 387	126698073	conjugative transposon protein
7	CD630_04980	586451..587836 [+], 1386	126698074	cell-division FtsK/SpoIIIE-family protein Tn5397, CTn3-Orf21	Orf21_Tn
8	CD630_04981	587839..587991 [+], 153	126698075	conjugative transposon protein
9	CD630_04990	588010..589218 [+], 1209	126698076	replication initiation factor
10	CD630_04991	589261..589482 [+], 222	126698077	conjugative transposon protein	Orf19_Tn
11	CD630_05000	589599..590096 [+], 498	126698078	antirestriction protein
12	CD630_05010	590184..590576 [+], 393	126698079	conjugative transposon protein	Orf17_Tn
13	CD630_05020	590560..593007 [+], 2448	126698080	ATPase	Orf16_Tn
14	CD630_05030	593007..595175 [+], 2169	126698081	membrane protein	Orf15_Tn
15	CD630_05060	596830..598659 [+], 1830	126698083	Reverse transcriptase/maturase/endonuclease,Group II intron
16	CD630_05070	598817..599749 [+], 933	126698084	conjugative transposon protein	Orf13_Tn
17	CD630_05080 (tetM)	600034..601953 [+], 1920	126698086	Tetracycline resistance protein Tn5397
18	CD630_05081	602049..602243 [+], 195	400927276	conjugative transposon protein
19	CD630_05090	602302..602655 [-], 354	126698088	HTH-type transcriptional regulator
20	CD630_05091	602866..602931 [+], 66	126698089	conjugative transposon protein
21	CD630_05100	603157..603582 [+], 426	126698090	RNA polymerase sigma factor
22	CD630_05101	603579..603809 [+], 231	126698091	conjugative transposon protein
23	CD630_05103	604190..604330 [+], 141	400927277	conjugative transposon protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) Tn5397 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Sebaihia M; Wren BW; Mullany P; Fairweather NF; Minton N; Stabler R; Thomson NR; Roberts AP; Cerdeno-Tarraga AM; Wang H; Holden MT; Wright A; Churcher C; Quail MA; Baker S; Bason N; Brooks K; Chillingworth T; Cronin A; Davis P; Dowd L; Fraser A; Feltwell T; Hance Z; Holroyd S; Jagels K; Moule S; Mungall K; Price C; Rabbinowitsch E; Sharp S; Simmonds M; Stevens K; Unwin L; Whithead S; Dupuy B; Dougan G; Barrell B; Parkhill J (2006). The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet. 38(7):779-86. [PudMed:16804543]