 T4SS ID | 650 |
| Strain | Clostridiales genomosp. BVAB3 str. UPII9-5 |
| Replicon | chromosome [Browse all T4SS(s) in this replicon] |
| Accession | NC_013895 |
| Location | 539356..550020 |
| Name | Tra_Tn |
| Function | conjugation |
| Classification | Type IVD; Type GP |
 Bioinformatics investigation has been performed on this T4SS. | |
T4SS components |
| Component | Orf13_Tn | Orf14_Tn | Orf15_Tn | Orf16_Tn | Orf17_Tn | Orf19_Tn | Orf21_Tn |
| Number | 1 | 1 | 1 | 2 | 1 | 1 | 1 |
The information of T4SS components from NC_013895 | ||||||
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | HMPREF0868_1220 | 534550..535209 [+], 660 | 289449912 | single-strand binding family protein | ||
| 2 | HMPREF0868_1219 | 535352..535558 [+], 207 | 289449650 | DNA-binding helix-turn-helix protein | ||
| 3 | HMPREF0868_1218 | 535649..536674 [+], 1026 | 289450092 | hypothetical protein | ||
| 4 | HMPREF0868_1217 | 536674..537564 [+], 891 | 308513230 | hypothetical protein | ||
| 5 | HMPREF0868_1216 | 537568..538287 [+], 720 | 308513231 | hypothetical protein | ||
| 6 | HMPREF0868_1215 | 538611..538925 [+], 315 | 289450078 | hypothetical protein | ||
| 7 | HMPREF0868_1214 | 538941..539327 [+], 387 | 289450342 | hypothetical protein | ||
| 8 | HMPREF0868_1213 | 539356..540741 [+], 1386 | 289449505 | FtsK/SpoIIIE family protein | Orf21_Tn | |
| 9 | HMPREF0868_1212 | 540919..542124 [+], 1206 | 289450523 | DNA-binding helix-turn-helix protein | ||
| 10 | HMPREF0868_1211 | 542167..542388 [+], 222 | 289450419 | hypothetical protein | Orf19_Tn | |
| 11 | HMPREF0868_1210 (ardA) | 542505..542999 [+], 495 | 289450397 | antirestriction protein | ||
| 12 | HMPREF0868_1209 | 542974..543480 [+], 507 | 289449595 | hypothetical protein | Orf17_Tn | |
| 13 | HMPREF0868_1208 | 543464..544579 [+], 1116 | 308513232 | hypothetical protein | Orf16_Tn | |
| 14 | HMPREF0868_1207 | 544576..545910 [+], 1335 | 308513233 | ATP/GTP-binding family protein | Orf16_Tn | |
| 15 | HMPREF0868_1206 | 545913..548090 [+], 2178 | 289450131 | hypothetical protein | Orf15_Tn | |
| 16 | HMPREF0868_1205 | 548087..549088 [+], 1002 | 289450607 | NlpC/P60 family protein | Orf14_Tn | |
| 17 | HMPREF0868_1204 | 549103..550020 [+], 918 | 289449915 | hypothetical protein | Orf13_Tn | |
| 18 | HMPREF0868_1203 | 550265..550381 [+], 117 | 289449655 | tetracycline resistance determinant leader peptide | ||
| 19 | HMPREF0868_1202 | 550397..552316 [+], 1920 | 289449644 | putative translation elongation factor G | ||
| 20 | HMPREF0868_1201 | 552662..553015 [-], 354 | 289450382 | DNA-binding helix-turn-helix protein | ||
| 21 | HMPREF0868_1200 | 553520..553942 [+], 423 | 289450801 | sigma-70, region 4 | ||
| 22 | HMPREF0868_1199 | 554233..554361 [-], 129 | 289449933 | hypothetical protein | ||
| 23 | HMPREF0868_1198 | 554630..554833 [+], 204 | 289449399 | DNA binding domain-containing protein, excisionase family | ||
 Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any. |
Download FASTA format files |
| Proteins Genes |
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(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]
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| This literature contains bioinformatics investigation |