T4SS ID	647
Strain	Staphylococcus pseudintermedius HKU10-03
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_014925
Location	2201927..2212592
Name	Tra_Tn
Function	conjugation
Classification	Type IVD; Type GP
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	Orf13_Tn	Orf14_Tn	Orf15_Tn	Orf16_Tn	Orf17_Tn	Orf19_Tn	Orf21_Tn
Number	1	1	1	1	1	1	1

The information of T4SS components from NC_014925
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	SPSINT_2109	2197115..2197318 [-], 204	319893398	Tn916 ORF1- like transposon excisionase
2	SPSINT_2110	2198006..2198428 [-], 423	319893399	Tn916-associated hypothetical protein
3	SPSINT_2111	2198932..2199285 [+], 354	319893400	Tn916-associated transcriptional regulator
4	SPSINT_2112	2199631..2201550 [-], 1920	319893401	tetracycline resistance protein TetM
5	SPSINT_2113	2201927..2202859 [-], 933	319893402	hypothetical protein	Orf13_Tn
6	SPSINT_2114	2202856..2203857 [-], 1002	319893403	lipoprotein, NLP/P60 family	Orf14_Tn
7	SPSINT_2115	2203854..2206031 [-], 2178	319893404	hypothetical protein	Orf15_Tn
8	SPSINT_2116	2206034..2208481 [-], 2448	319893405	hypothetical protein	Orf16_Tn
9	SPSINT_2117	2208465..2208857 [-], 393	319893406	Tn916-associated hypothetical protein	Orf17_Tn
10	SPSINT_2118	2208946..2209443 [-], 498	319893407	antirestriction protein
11	SPSINT_2119	2209560..2209781 [-], 222	319893408	Conjugation-like protein	Orf19_Tn
12	SPSINT_2120	2209824..2211029 [-], 1206	319893409	Tn916-associated transcriptional regulator
13	SPSINT_2121	2211207..2212592 [-], 1386	319893410	cell division protein FtsK	Orf21_Tn
14	SPSINT_2122	2212621..2213007 [-], 387	319893411	hypothetical protein
15	SPSINT_2123	2213023..2213178 [-], 156	319893412	hypothetical protein
16	SPSINT_2124	2213663..2213908 [+], 246	319893413	hypothetical protein
17	SPSINT_2125	2214798..2216657 [-], 1860	319893414	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICESpsHKU1003-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation