T4SS ID	357
Strain	Acidovorax ebreus TPSY
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_011992
Location	3747460..3759500
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	0	1

The information of T4SS components from NC_011992
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Dtpsy_3492	3743332..3743886 [+], 555	222112653	adenine phosphoribosyltransferase
2	Dtpsy_3493	3743922..3744758 [-], 837	222112654	hypothetical protein
3	Dtpsy_3494	3744896..3745417 [-], 522	222112655	cyclic nucleotide-binding protein
4	Dtpsy_3495 (trmE)	3745475..3746878 [-], 1404	222112656	tRNA modification GTPase trme
5	Dtpsy_3496	3747218..3747463 [-], 246	222112657	hypothetical protein
6	Dtpsy_3497	3747460..3748731 [-], 1272	222112658	conjugation trbi family protein	TrbI
7	Dtpsy_3498	3748734..3749726 [-], 993	222112659	p-type conjugative transfer protein trbg	TrbG
8	Dtpsy_3499	3749723..3750427 [-], 705	222112660	conjugal transfer protein Trbf	TrbF
9	Dtpsy_3500	3750446..3751798 [-], 1353	222112661	conjugal transfer protein Trbl	TrbL
10	Dtpsy_3501	3751795..3752103 [-], 309	222112662	lipoprotein
11	Dtpsy_3502	3752115..3752870 [-], 756	222112663	conjugal transfer protein Trbj	TrbJ
12	Dtpsy_3503	3752867..3755338 [-], 2472	222112664	conjugal transfer ATPase Trbe	TrbE
13	Dtpsy_3504	3755353..3755625 [-], 273	222112665	conjugal transfer protein TrbD	TrbD
14	Dtpsy_3505	3755622..3756008 [-], 387	222112666	conjugal transfer protein Trbc	TrbC
15	Dtpsy_3506	3756005..3757039 [-], 1035	222112667	p-type conjugative transfer ATPase trbb	TrbB
16	Dtpsy_3507	3757036..3757500 [-], 465	222112668	copg domain-containing protein DNA-binding domain-containing protein
17	Dtpsy_3508	3757497..3759500 [-], 2004	222112669	conjugal transfer coupling protein trag	TraG
18	Dtpsy_3509	3759716..3759943 [-], 228	222112670	hypothetical protein
19	Dtpsy_3510	3759969..3760883 [-], 915	222112671	LysR family transcriptional regulator
20	Dtpsy_3511	3761127..3761756 [-], 630	222112672	two component LuxR family transcriptional regulator
21	Dtpsy_3512	3761753..3762826 [-], 1074	222112673	histidine kinase
22	Dtpsy_3513	3762831..3763076 [-], 246	222112674	hypothetical protein
23	Dtpsy_3514	3763140..3763868 [-], 729	222112675	mgtc/sapb transporter

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6066 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation