T4SS ID	345
Strain	Delftia acidovorans SPH-1
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010002
Location	2959059..2971120
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	0	1

The information of T4SS components from NC_010002
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Daci_2684	2954554..2955759 [-], 1206	160898125	hypothetical protein
2	Daci_2685	2955756..2956907 [-], 1152	160898126	RND family efflux transporter MFP subunit
3	Daci_2686	2956904..2957512 [-], 609	160898127	TetR family transcriptional regulator
4	Daci_2687	2957910..2958164 [+], 255	160898128	SCO1/SenC family protein
5	Daci_2688	2958191..2958670 [+], 480	160898129	hypothetical protein
6	Daci_2689	2958787..2959062 [-], 276	160898130	hypothetical protein
7	Daci_2690	2959059..2960327 [-], 1269	160898131	conjugation TrbI family protein	TrbI
8	Daci_2691	2960330..2961331 [-], 1002	160898132	P-type conjugative transfer protein TrbG	TrbG
9	Daci_2692	2961328..2962032 [-], 705	160898133	conjugal transfer protein TrbF	TrbF
10	Daci_2693	2962051..2963403 [-], 1353	160898134	conjugal transfer protein TrbL	TrbL
11	Daci_2694	2963400..2963726 [-], 327	160898135	putative lipoprotein
12	Daci_2695	2963738..2964493 [-], 756	160898136	conjugal transfer protein TrbJ	TrbJ
13	Daci_2696	2964490..2966961 [-], 2472	160898137	conjugal transfer ATPase TrbE	TrbE
14	Daci_2697	2966976..2967248 [-], 273	160898138	putative conjugal transfer TrbD transmembrane protein	TrbD
15	Daci_2698	2967245..2967622 [-], 378	160898139	conjugal transfer protein TrbC	TrbC
16	Daci_2699	2967619..2968653 [-], 1035	160898140	P-type conjugative transfer ATPase TrbB	TrbB
17	Daci_2700	2968650..2969114 [-], 465	160898141	CopG/DNA-binding domain-containing protein
18	Daci_2701	2969111..2971120 [-], 2010	160898142	conjugal transfer coupling protein TraG	TraG
19	Daci_2702	2971337..2971492 [-], 156	160898143	putative lipoprotein
20	Daci_2703	2971590..2972504 [-], 915	160898144	LysR family transcriptional regulator
21	Daci_2704	2972547..2972969 [-], 423	160898145	diacylglycerol kinase
22	Daci_2705	2972981..2974654 [-], 1674	160898146	sulfatase
23	Daci_2706	2974651..2975433 [-], 783	160898147	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6037 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation