SecReT4

T4SS
References

T4SS ID	332
Strain	Paracoccus denitrificans PD1222
Replicon	chromosome 1 [Browse all T4SS(s) in this replicon]
Accession	NC_008686
Location	1436499..1445972; 1470887..1476608
Name	Trb
Function	NA
Classification	Type IVA; Type P
This T4SS is identified in this study.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	1	1	1

The information of T4SS components from NC_008686
Region 1: 1436499..1445972

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Pden_1469	1432068..1432523 [+], 456	119384209	AsnC family transcriptional regulator
2	Pden_1470	1432553..1433176 [+], 624	119384210	lysine exporter protein LysE/YggA
3	Pden_1471	1433351..1434349 [+], 999	119384211	LysR family transcriptional regulator
4	Pden_1472	1434342..1435595 [+], 1254	119384212	type 12 methyltransferase
5	Pden_1473	1435611..1436129 [-], 519	119384213	dehydratase
6	Pden_1474	1436263..1436496 [-], 234	119384214	hypothetical protein
7	Pden_1475	1436499..1437620 [-], 1122	119384215	conjugation TrbI family protein	TrbI
8	Pden_1476	1437617..1438645 [-], 1029	119384216	conjugal transfer protein TrbG/VirB9/CagX	TrbG
9	Pden_1477	1438642..1439331 [-], 690	119384217	conjugal transfer protein TrbF	TrbF
10	Pden_1478	1439328..1440680 [-], 1353	119384218	conjugal transfer protein TrbL	TrbL
11	Pden_1479	1440684..1440971 [-], 288	119384219	hypothetical protein
12	Pden_1480	1440989..1441771 [-], 783	119384220	conjugal transfer protein TrbJ	TrbJ
13	Pden_1481	1441768..1444278 [-], 2511	119384221	conjugal transfer ATPase TrbE	TrbE
14	Pden_1482	1444285..1444578 [-], 294	119384222	conjugal transfer protein trbB	TrbD
15	Pden_1483	1444645..1444977 [-], 333	119384223	conjugal transfer protein TrbC	TrbC
16	Pden_1484	1444974..1445972 [-], 999	119384224	type II secretion system protein E	TrbB
17	Pden_1485	1446345..1447265 [+], 921	119384225	helix-turn-helix domain-containing protein
18	Pden_1486	1447354..1449435 [+], 2082	119384226	TonB-dependent receptor
19	Pden_1487	1449435..1450445 [+], 1011	119384227	type 12 methyltransferase

Region 2: 1470887..1476608

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Pden_1500	1466069..1467028 [+], 960	119384240	helix-turn-helix domain-containing protein
2	Pden_1501	1467357..1467746 [-], 390	119384241	hypothetical protein
3	Pden_1502	1467733..1468083 [-], 351	119384242	hypothetical protein
4	Pden_1503	1468070..1469287 [-], 1218	119384243	hypothetical protein
5	Pden_1504	1469486..1470022 [-], 537	119384244	hypothetical protein
6	Pden_1505	1470456..1470884 [-], 429	119384245	hypothetical protein
7	Pden_1506	1470887..1472872 [-], 1986	119384246	conjugal transfer coupling protein TraG	TraG
8	Pden_1507	1472899..1474653 [-], 1755	119384247	hypothetical protein
9	Pden_1508	1474897..1475661 [-], 765	119384248	lytic transglycosylase, catalytic	TrbN
10	Pden_1509	1475664..1475999 [-], 336	119384249	hypothetical protein
11	Pden_1510	1476066..1476608 [-], 543	119384250	conjugal transfer protein precursor	TraF
12	Pden_1511	1476605..1477126 [-], 522	119384251	hypothetical protein
13	Pden_1512	1477126..1478298 [-], 1173	119384252	replication protein A
14	Pden_1513	1478317..1478598 [-], 282	119384253	hypothetical protein
15	Pden_1514	1478736..1479131 [-], 396	119384254	hypothetical protein
16	Pden_1515	1479202..1479561 [-], 360	119384255	hypothetical protein
17	Pden_1516	1479617..1479880 [-], 264	119384256	hypothetical protein
18	Pden_1517	1479986..1480243 [-], 258	119384257	XRE family transcriptional regulator
19	Pden_1518	1480430..1480753 [-], 324	119384258	hypothetical protein
20	Pden_1519	1480790..1481251 [+], 462	119384259	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_008686