T4SS ID	330
Strain	Ralstonia pickettii 12J
Replicon	chromosome 1 [Browse all T4SS(s) in this replicon]
Accession	NC_010682
Location	2757009..2768795
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	0	1

The information of T4SS components from NC_010682
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Rpic_2638	2752115..2753896 [+], 1782	187929709	acyl-CoA dehydrogenase domain-containing protein
2	Rpic_2639	2753921..2754670 [+], 750	187929710	electron transfer flavoprotein alpha/beta-subunit
3	Rpic_2640	2754671..2755603 [+], 933	187929711	electron transfer flavoprotein subunit alpha
4	Rpic_2641	2755621..2756535 [+], 915	187929712	LysR family transcriptional regulator
5	Rpic_2642	2756561..2756791 [+], 231	187929713	hypothetical protein
6	Rpic_2643	2757009..2759027 [+], 2019	187929714	conjugal transfer coupling protein TraG	TraG
7	Rpic_2644	2759024..2759488 [+], 465	187929715	DNA-binding domain-containing protein
8	Rpic_2645	2759485..2760522 [+], 1038	187929716	P-type conjugative transfer ATPase TrbB	TrbB
9	Rpic_2646	2760519..2760911 [+], 393	187929717	conjugal transfer protein Trbc	TrbC
10	Rpic_2647	2760908..2761192 [+], 285	187929718	putative conjugal transfer TrbD transmembrane protein	TrbD
11	Rpic_2648	2761212..2763689 [+], 2478	187929719	conjugal transfer ATPase TrbE	TrbE
12	Rpic_2649	2763686..2764441 [+], 756	187929720	conjugal transfer protein TrbJ	TrbJ
13	Rpic_2650	2764454..2765806 [+], 1353	187929721	conjugal transfer protein TrbL	TrbL
14	Rpic_2651	2765825..2766529 [+], 705	187929722	conjugal transfer protein TrbF	TrbF
15	Rpic_2652	2766526..2767521 [+], 996	187929723	P-type conjugative transfer protein TrbG	TrbG
16	Rpic_2653	2767524..2768795 [+], 1272	187929724	conjugation TrbI family protein	TrbI
17	Rpic_2654	2768792..2769037 [+], 246	187929725	hypothetical protein
18	Rpic_2655	2769315..2769980 [-], 666	187929726	putative partition-like protein
19	Rpic_2656	2770055..2771551 [-], 1497	187929727	cobyric acid synthase
20	Rpic_2657	2771613..2772188 [+], 576	187929728	adenosylcobinamide-phosphate guanylyltransferase
21	Rpic_2658 (cobD)	2772185..2773165 [+], 981	187929729	cobalamin biosynthesis protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6033 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation