T4SS ID	308
Strain	Thioalkalivibrio sulfidophilus HL-EbGr7
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_011901
Location	2004608..2030886
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	1	1

The information of T4SS components from NC_011901
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Tgr7_1874	1999702..2000007 [-], 306	220935043	XRE family transcriptional regulator
2	Tgr7_1875	2000251..2000601 [+], 351	220935044	lipoprotein
3	Tgr7_1876	2000910..2001671 [+], 762	220935045	hypothetical protein
4	Tgr7_1877	2001755..2002036 [+], 282	220935046	hypothetical protein
5	Tgr7_1878	2002063..2002920 [+], 858	220935047	replication initiator and transcription repressor protein
6	Tgr7_1879	2003174..2003812 [+], 639	220935048	Cobyrinic acid ac-diamide synthase
7	Tgr7_1880	2003809..2004081 [+], 273	220935049	hypothetical protein
8	Tgr7_1881	2004078..2004611 [+], 534	220935050	transposon
9	Tgr7_1882	2004608..2005207 [+], 600	220935051	serine peptidase	TraF
10	Tgr7_1883	2005518..2007629 [+], 2112	220935052	hypothetical protein
11	Tgr7_1884	2007655..2008389 [-], 735	220935053	response regulator receiver protein
12	Tgr7_1885	2008373..2011114 [-], 2742	220935054	sensor protein KdpD
13	Tgr7_1886	2011207..2011662 [-], 456	220935055	PTS system, nitrogen regulatory IIA component
14	Tgr7_1887	2011659..2012315 [-], 657	220935056	Potassium-transporting ATPase
15	Tgr7_1888	2012326..2014365 [-], 2040	220935057	potassium-transporting ATPase subunit B
16	Tgr7_1889	2014376..2016085 [-], 1710	220935058	potassium-transporting ATPase subunit A
17	Tgr7_1890	2016140..2016817 [-], 678	220935059	hypothetical protein
18	Tgr7_1891	2017350..2018294 [+], 945	220935060	LysR family transcriptional regulator
19	Tgr7_1892	2018291..2018569 [+], 279	220935061	lipoprotein
20	Tgr7_1893	2018806..2020818 [+], 2013	220935062	conjugal transfer coupling protein TraG	TraG
21	Tgr7_1894	2020815..2021279 [+], 465	220935063	CopG family transcriptional regulator
22	Tgr7_1895	2021276..2022346 [+], 1071	220935064	P-type conjugative transfer ATPase TrbB	TrbB
23	Tgr7_1896	2022343..2022735 [+], 393	220935065	Conjugal transfer protein TrbC	TrbC
24	Tgr7_1897	2022732..2023004 [+], 273	220935066	conjugal transfer TrbD transmembrane protein	TrbD
25	Tgr7_1898	2023017..2025470 [+], 2454	220935067	conjugal transfer ATPase TrbE	TrbE
26	Tgr7_1899	2025467..2026192 [+], 726	220935068	conjugal transfer protein TrbJ	TrbJ
27	Tgr7_1900	2026204..2026524 [+], 321	220935069	lipoprotein
28	Tgr7_1901	2026521..2027903 [+], 1383	220935070	conjugal transfer protein TrbL	TrbL
29	Tgr7_1902	2027916..2028620 [+], 705	220935071	conjugal transfer protein TrbF	TrbF
30	Tgr7_1903	2028617..2029609 [+], 993	220935072	P-type conjugative transfer protein TrbG	TrbG
31	Tgr7_1904	2029612..2030886 [+], 1275	220935073	conjugation TrbI family protein	TrbI
32	Tgr7_1905	2030883..2031125 [+], 243	220935074	hypothetical protein
33	Tgr7_1906	2032038..2032595 [-], 558	220935075	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
34	Tgr7_1907	2032602..2034431 [-], 1830	220935076	excinuclease ABC subunit C
35	Tgr7_1908	2034451..2035107 [-], 657	220935077	hypothetical protein
36	Tgr7_1909	2035170..2035832 [-], 663	220935078	response regulator receiver protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6071 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation