T4SS ID	300
Strain	Ralstonia solanacearum GMI1000
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_003295
Location	2781912..2807465
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	1	1

The information of T4SS components from NC_003295
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	RSc2569 (alkA)	2777509..2778147 [+], 639	17547288	DNA-3-methyladenine glycosylase
2	RSc2570 (ada)	2778230..2779312 [+], 1083	17547289	bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator
3	RSc2571	2779312..2779581 [+], 270	17547290	hypothetical protein
4	RSc2572	2779621..2780043 [+], 423	17547291	lipoprotein
5	RSc2573 (tISRso15)	2780153..2781373 [+], 1221	17547292	ISRSO15-transposase
6	RSc2574	2781673..2781915 [-], 243	17547293	hypothetical protein
7	RSc2575 (trbI)	2781912..2783189 [-], 1278	17547294	conjugal transfer TrbI transmembrane protein	TrbI
8	RSc2576 (trbG)	2783192..2784196 [-], 1005	17547295	conjugal transfer lipoprotein TrbG	TrbG
9	RSc2577 (trbF)	2784193..2784897 [-], 705	17547296	conjugal transfer protein TrbF	TrbF
10	RSc2578 (trbL)	2784928..2786301 [-], 1374	17547297	conjugal transfer protein TrbL	TrbL
11	RSc2579	2786298..2786624 [-], 327	17547298	lipoprotein
12	RSc2580 (trbJ)	2786637..2787374 [-], 738	17547299	conjugal transfer protein TrbJ	TrbJ
13	RSc2581 (trbE)	2787371..2789821 [-], 2451	17547300	conjugal transfer ATPase TrbE	TrbE
14	RSc2582 (trbD)	2789834..2790106 [-], 273	17547301	conjugal transfer TrbD transmembrane protein	TrbD
15	RSc2583 (trbC)	2790103..2790495 [-], 393	17547302	conjugal transfer TrbC transmembrane protein	TrbC
16	RSc2584 (trbB)	2790492..2791559 [-], 1068	17547303	conjugal transfer protein TrbB	TrbB
17	RSc2585	2791556..2792032 [-], 477	17547304	hypothetical protein
18	RSc2586 (traG)	2792029..2794056 [-], 2028	17547305	conjugal transfer protein TraG	TraG
19	RSc2587	2794292..2794555 [-], 264	17547306	lipoprotein
20	RSc2588	2794552..2795496 [-], 945	17547307	transcription regulator protein
21	RSc2589	2795654..2796046 [-], 393	17547308	hypothetical protein
22	RSc2590	2796232..2796618 [-], 387	17547309	hypothetical protein
23	RSc2591	2796769..2797659 [+], 891	17547310	transcriptional regulator transcription regulator protein
24	RSc2592	2797761..2798117 [+], 357	17547311	hypothetical protein
25	RSc2593	2798145..2799572 [-], 1428	17547312	carboxylesterase
26	RSc2594	2799637..2800311 [-], 675	17547313	glutathione-S-transferase
27	RSc2595	2800406..2800735 [-], 330	17547314	hypothetical protein
28	RSc2596	2800779..2801369 [-], 591	17547315	hypothetical protein
29	RSc2597	2801443..2802201 [-], 759	17547316	dehydrogenase/reductase oxidoreductase
30	RSc2598	2802374..2803273 [+], 900	17547317	transcription regulator protein
31	RSc2599	2803326..2804081 [-], 756	17547318	hypothetical protein
32	RSc2600	2804006..2804443 [+], 438	17547319	hypothetical protein
33	RSc2601	2804432..2806483 [-], 2052	17547320	hypothetical protein
34	RSc2602 (traF)	2806866..2807465 [-], 600	17547321	conjugal transfer TraF transmembrane protein	TraF
35	RSc2603	2807462..2808007 [-], 546	17547322	hypothetical protein
36	RSc2604	2808004..2808288 [-], 285	17547323	hypothetical protein
37	RSc2605 (parA3)	2808276..2808914 [-], 639	17547324	partition protein
38	RSc2606	2809180..2810025 [-], 846	17547325	replication initiator and transcription repressor protein
39	RSc2607	2810052..2810327 [-], 276	17547326	hypothetical protein
40	RSc2608	2810442..2811212 [-], 771	17547327	hypothetical protein
41	RSc2609	2811557..2812150 [-], 594	17547328	lipoprotein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICERsoGMI1000-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation