T4SS ID	296
Strain	Azotobacter vinelandii DJ
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_012560
Location	3636078..3646864
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	0	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	0	1

The information of T4SS components from NC_012560
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Avin_35560	3631223..3631330 [+], 108	226945607	hypothetical protein
2	Avin_35570	3631382..3631699 [+], 318	226945608	hypothetical protein
3	Avin_35580	3631903..3632400 [-], 498	226945609	hypothetical protein
4	Avin_35590	3632844..3633860 [-], 1017	226945610	transposase IS116/IS110/IS902
5	Avin_35600	3633976..3634293 [+], 318	226945611	transposase
6	Avin_35620	3634554..3634799 [-], 246	226945612	hypothetical protein
7	Avin_35640 (trbG)	3636078..3636974 [-], 897	226945613	P-type conjugative transfer protein TrbG	TrbG
8	Avin_35650 (trbF)	3637076..3637780 [-], 705	226945614	conjugal transfer protein TrbF	TrbF
9	Avin_35660 (trbL)	3637811..3639184 [-], 1374	226945615	conjugal transfer protein TrbL	TrbL
10	Avin_35670	3639181..3639483 [-], 303	226945616	lipoprotein
11	Avin_35680 (trbJ)	3639496..3640233 [-], 738	226945617	conjugal transfer protein TrbJ	TrbJ
12	Avin_35690 (trbE)	3640230..3642680 [-], 2451	226945618	conjugal transfer ATPase TrbE	TrbE
13	Avin_35700 (trbD)	3642693..3642977 [-], 285	226945619	P-type conjugative transfer protein TrbD	TrbD
14	Avin_35710 (trbC)	3642974..3643258 [-], 285	226945620	P-type conjugative transfer protein TrbC	TrbC
15	Avin_35720 (trbB)	3643354..3644406 [-], 1053	226945621	P-type conjugative transfer ATPase TrbB	TrbB
16	Avin_35730	3644403..3644867 [-], 465	226945622	hypothetical protein
17	Avin_35740	3644864..3646864 [-], 2001	226945623	conjugal transfer coupling protein TraG	TraG
18	Avin_35750	3647100..3647366 [-], 267	226945624	lipoprotein
19	Avin_35760	3647363..3648307 [-], 945	226945625	LysR family transcriptional regulator
20	Avin_35770	3648318..3649796 [-], 1479	226945626	major Facilitator Superfamily transporter
21	Avin_35780	3649892..3650509 [+], 618	226945627	TetR family transcriptional regulator
22	Avin_35790	3650610..3651641 [-], 1032	226945628	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICEAviDJ-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation