SecReT4
T4SS ID253
StrainAgrobacterium radiobacter K84
Repliconplasmid pAtK84b [Browse all T4SS(s) in this replicon]
AccessionNC_011990
Location55612..62178; 119203..128876
NameTrb
FunctionNA
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111111
ComponentTrbKTrbLTrbNTraFTraG
Number11011

The information of T4SS components from NC_011990
Region 1: 55612..62178
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Arad_1407551346..52092 [-], 747222108992S-adenosylmethionine-dependent methyltransferase 
2Arad_1407652261..52566 [+], 306222108993resolvase protein 
3Arad_1407952651..53301 [+], 651222108994hypothetical protein 
4Arad_1408053625..53795 [+], 171222108995hypothetical protein 
5Arad_14082 (hns)53837..54115 [-], 279222108996HNS-type DNA binding protein 
6Arad_1408554253..54510 [-], 258222108997hypothetical protein 
7Arad_1408854750..55217 [-], 468222108998nuclease 
8Arad_1408955217..55639 [-], 423222108999hypothetical protein 
9Arad_14091 (traG)55612..57588 [-], 1977222109000conjugal transfer coupling protein TraG  TraG
10Arad_14092 (traD)57575..57790 [-], 216222109001Dtr conjugal transfer protein 
11Arad_1409357795..58247 [-], 453222109002Dtr conjugal transfer protein 
12Arad_14094 (traA)58322..61654 [+], 3333222109003Dtr system oriT relaxase 
13Arad_14095 (traF)61651..62178 [+], 528222109004conjugal transfer pilin processing protease TraF  TraF
14Arad_14096 (traB)62195..63364 [+], 1170222109005conjugal transfer protein TraB 
15Arad_14097 (traH)63378..64007 [+], 630222109006conjugal transfer protein TraH 
16Arad_1409864020..64925 [-], 906222109007Transcriptional regulator 
17Arad_1410065130..65885 [+], 756222109008ABC transporter ATP-binding protein 
18Arad_1410165875..66573 [+], 699222109009hypothetical protein 
 
Region 2: 119203..128876
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Arad_14161 (nocM)114615..115340 [-], 726222109051opine ABC transporter permease 
2Arad_14163 (nocQ)115342..116052 [-], 711222109052nopaline ABC transporter 
3Arad_14164 (nocT)116125..116976 [-], 852222109053nopaline binding protein of ABC transporter 
4Arad_14165 (nocP)117042..117815 [-], 774222109054opine permease ATP-binding protein 
5Arad_14166 (nocR)118036..118971 [+], 936222109055nopaline catabolism transcriptional regulator protein 
6Arad_14167 (trbI)119203..120513 [-], 1311222109056conjugal transfer protein TrbI  TrbI
7Arad_14168 (trbH)120526..121002 [-], 477222109057conjugal transfer protein TrbH  TrbH
8Arad_14169 (trbG)121002..121892 [-], 891222109058conjugal transfer protein TrbG  TrbG
9Arad_14170 (trbF)121874..122536 [-], 663222109059conjugal transfer protein TrbF  TrbF
10Arad_14172 (trbL)122551..123747 [-], 1197222109060conjugal transfer protein TrbL  TrbL
11Arad_14173 (trbK)123741..123959 [-], 219222109061entry-exclusion protein  TrbK
12Arad_14175 (trbJ)123956..124765 [-], 810222109062conjugal transfer protein TrbJ  TrbJ
13Arad_14177 (trbE)124737..127205 [-], 2469222109063conjugal transfer protein TrbE  TrbE
14Arad_14178 (trbD)127216..127515 [-], 300222109064conjugal transfer protein TrbD  TrbD
15Arad_14179 (trbC)127508..127915 [-], 408222109065conjugal transfer protein TrbC  TrbC
16Arad_14181 (trbB)127905..128876 [-], 972222109066conjugal transfer protein TrbB  TrbB
17Arad_14182 (traI)128873..129511 [-], 639222109067putative autoinducer synthesis protein 
18Arad_14184 (repA)129854..131089 [+], 1236222109068plasmid-partitioning protein RepA 
19Arad_14185 (repB)131319..132329 [+], 1011222109069plasmid partitioning protein RepB 
20Arad_14186 (repC)132544..133863 [+], 1320222109070replication initiation protein RepC 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_011990

Genomics & Bioinformatics Group in MML, SJTU