The information of T4SS components from NC_011982 |
| Region 1: 84307..90859 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | Avi_8115 (xerC) | 79742..80680 [+], 939 | 222080176 | site-specific tyrosine recombinase XerC | | |
| 2 | Avi_8116 | 80677..81684 [+], 1008 | 222080177 | integrase/recombinase | | |
| 3 | Avi_8119 | 82014..82316 [+], 303 | 222080178 | hypothetical protein | | |
| 4 | Avi_8120 | 82457..82654 [+], 198 | 222080179 | hypothetical protein | | |
| 5 | Avi_8121 | 82794..83042 [+], 249 | 222080180 | hypothetical protein | | |
| 6 | Avi_8123 | 83145..83423 [-], 279 | 222080181 | HNS-type DNA binding protein | | |
| 7 | Avi_8126 | 83507..83815 [-], 309 | 222080182 | hypothetical protein | | |
| 8 | Avi_8127 (yci) | 83870..84310 [-], 441 | 222080183 | nuclease | | |
| 9 | Avi_8128 (traG) | 84307..86271 [-], 1965 | 222080184 | conjugal transfer coupling protein TraG | TraG | |
| 10 | Avi_8129 (traD) | 86258..86473 [-], 216 | 222080185 | conjugal transfer protein Dtr system | | |
| 11 | Avi_8130 (traC) | 86478..86774 [-], 297 | 222080186 | conjugal transfer protein TraC | | |
| 12 | Avi_8131 (traA) | 87030..90332 [+], 3303 | 222080187 | Dtr system oriT relaxase | | |
| 13 | Avi_8132 (traF) | 90329..90859 [+], 531 | 222080188 | conjugal transfer pilin processing protease TraF | TraF | |
| 14 | Avi_8135 (traH) | 92094..92723 [+], 630 | 222080189 | conjugal transfer protein TraH | | |
| 15 | Avi_8136 | 92879..93325 [+], 447 | 222080190 | hypothetical protein | | |
| 16 | Avi_8137 | 93351..93785 [+], 435 | 222080191 | hypothetical protein | | |
| 17 | Avi_8138 (traM) | 94123..94431 [+], 309 | 222080192 | transcriptional repressor | | |
| 18 | Avi_8140 (traR) | 94839..95522 [-], 684 | 222080193 | transcriptional regulator TraR | | |
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| Region 2: 248211..257874 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | Avi_8320 (hyuA) | 243894..245924 [-], 2031 | 222080307 | hydantoin utilization protein | | |
| 2 | Avi_8321 (noxB) | 246018..247160 [-], 1143 | 222080308 | D-nopaline dehydrogenase | | |
| 3 | Avi_8322 (nocR) | 247266..248156 [+], 891 | 222080309 | LysR family transcriptional regulator | | |
| 4 | Avi_8323 (trbI) | 248211..249524 [-], 1314 | 222080310 | conjugal transfer protein TrbI | TrbI | |
| 5 | Avi_8324 (trbH) | 249537..250013 [-], 477 | 222080311 | conjugal transfer protein TrbH | TrbH | |
| 6 | Avi_8325 (trbG) | 250013..250867 [-], 855 | 222080312 | conjugal transfer protein TrbG | TrbG | |
| 7 | Avi_8326 (trbF) | 250884..251546 [-], 663 | 222080313 | conjugal transfer protein TrbF | TrbF | |
| 8 | Avi_8328 (trbL) | 251561..252589 [-], 1029 | 222080314 | conjugal transfer protein TrbL | TrbL | |
| 9 | Avi_8329 (trbK) | 252739..252966 [-], 228 | 222080315 | entry-exclusion protein | TrbK | |
| 10 | Avi_8330 (trbJ) | 252963..253772 [-], 810 | 222080316 | conjugal transfer protein TrbJ | TrbJ | |
| 11 | Avi_8331 (trbE) | 253744..256206 [-], 2463 | 222080317 | conjugal transfer protein TrbE | TrbE | |
| 12 | Avi_8332 (trbD) | 256217..256516 [-], 300 | 222080318 | conjugal transfer protein TrbD | TrbD | |
| 13 | Avi_8333 (trbC) | 256509..256913 [-], 405 | 222080319 | conjugal transfer protein TrbC | TrbC | |
| 14 | Avi_8334 (trbB) | 256903..257874 [-], 972 | 222080320 | conjugal transfer protein TrbB | TrbB | |
| 15 | Avi_8335 (traI) | 257871..258509 [-], 639 | 222080321 | putative autoinducer synthesis protein | | |
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T4SS ID
This T4SS is identified in this study.
Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.