SecReT4

T4SS
References

T4SS ID	186
Strain	Pseudomonas putida plasmid pGRT1 (NC_015855)
Replicon	plasmid pGRT1 [Browse all T4SS(s) in this replicon]
Accession	NC_015855
Location	6387..14333; 52468..65353; 121398..127061
Name	Tra_I
Function	NA
Classification	Type IVB; Type I
This T4SS is identified in this study.

T4SS components

Component	TraH_I	TraI_I	TraJ_I	TraK_I	TraL_I	TraM_I	TraN_I	TraO_I	TraP_I
Number	1	1	1	0	1	1	1	1	1
Component	TraQ_I	TraR_I	TraS_I	TraT_I	TraU_I	TraV_I	TraW_I	TraX_I	TraY_I
Number	1	1	0	1	1	0	1	1	1
Component	TrbA_I	TrbB_I	TrbC_I
Number	1	1	1

The information of T4SS components from NC_015855
Region 1: 6387..14333

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pGRT1_p002	5912..6403 [-], 492	340843789	hypothetical protein
2	pGRT1_p003	6387..6935 [-], 549	340843790	TraL	TraL_I
3	pGRT1_p004	6932..9601 [-], 2670	340843791	TraC-like protein
4	pGRT1_p005	9690..10052 [-], 363	340843792	TraC-like protein
5	pGRT1_p006	10264..10794 [+], 531	340843793	hypothetical protein
6	pGRT1_p007	10955..11473 [+], 519	340843794	hypothetical protein
7	pGRT1_p008	11515..11778 [-], 264	340843795	Trak protein
8	pGRT1_p009	11768..12946 [-], 1179	340843796	plasmid transfer ATPase TraJ	TraJ_I
9	pGRT1_p010	12943..13821 [-], 879	340843797	TraI protein	TraI_I
10	pGRT1_p011	13818..14333 [-], 516	340843798	TraH protein	TraH_I
11	pGRT1_p012	14337..16550 [-], 2214	340843799	relaxase MobA
12	pGRT1_p013	16550..16981 [-], 432	340843800	mobilization protein MobB
13	pGRT1_p014	17099..17527 [+], 429	340843801	mobilization protein MobC
14	pGRT1_p015	17539..18243 [+], 705	340843802	mobilization protein MobD
15	pGRT1_p016	18236..18865 [+], 630	340843803	mobilization protein MobE

Region 2: 52468..65353

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pGRT1_p047	47935..48246 [-], 312	340843834	hypothetical protein
2	pGRT1_p048	48515..49627 [-], 1113	340843835	KfrA protein
3	pGRT1_p049	50369..51595 [-], 1227	340843836	replication protein RepA
4	pGRT1_p050	52468..53217 [+], 750	340843837	transfer protein TraM	TraM_I
5	pGRT1_p051	53228..54370 [+], 1143	340843838	TraN protein	TraN_I
6	pGRT1_p052	54379..55737 [+], 1359	340843839	TraO protein	TraO_I
7	pGRT1_p053	55758..56480 [+], 723	340843840	TraP protein	TraP_I
8	pGRT1_p054	56491..57024 [+], 534	340843841	TraQ protein	TraQ_I
9	pGRT1_p055	57044..57490 [+], 447	340843842	TraR protein	TraR_I
10	pGRT1_p056	57536..58255 [+], 720	340843843	TraT protein	TraT_I
11	pGRT1_p057	58265..61345 [+], 3081	340843844	TraU protein	TraU_I
12	pGRT1_p058	61342..62586 [+], 1245	340843845	TraW protein	TraW_I
13	pGRT1_p059	62586..63179 [+], 594	340843846	TraX protein	TraX_I
14	pGRT1_p060	63176..65353 [+], 2178	340843847	TraY protein	TraY_I
15	pGRT1_p061	65475..65981 [+], 507	340843848	hypothetical protein
16	pGRT1_p062	66010..66774 [+], 765	340843849	hypothetical protein
17	pGRT1_p063	66800..67711 [+], 912	340843850	hypothetical protein
18	pGRT1_p064	67650..68147 [+], 498	340843851	hypothetical protein
19	pGRT1_p065	68394..68651 [-], 258	340843852	hypothetical protein
20	pGRT1_p066	69380..69883 [+], 504	340843853	ToxN-like protein

Region 3: 121398..127061

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pGRT1_p113	118086..118610 [-], 525	340843900	hypothetical protein
2	pGRT1_p114	118984..119757 [+], 774	340843901	putative ligase
3	pGRT1_p115	120015..121388 [-], 1374	340843902	hypothetical protein
4	pGRT1_p116	121398..123638 [-], 2241	340843903	TrbC protein	TrbC_I
5	pGRT1_p117	123649..124932 [-], 1284	340843904	DNA primase
6	pGRT1_p118	124942..125931 [-], 990	340843905	TrbB protein	TrbB_I
7	pGRT1_p119	125928..127061 [-], 1134	340843906	TrbA protein	TrbA_I
8	pGRT1_p120	127070..127486 [-], 417	340843907	lytic transglycosylase TrbN
9	pGRT1_p121	127622..130153 [+], 2532	340843908	DNA topoisomerase
10	pGRT1_p122	130564..130932 [+], 369	340843909	hypothetical protein
11	pGRT1_p123	130941..131324 [+], 384	340843910	hypothetical protein
12	pGRT1_p124	131266..131760 [+], 495	340843911	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_015855