SecReT4

T4SS
References

T4SS ID	179
Strain	Citrobacter freundii plasmid pCTX-M3 (NC_004464)
Replicon	plasmid pCTX-M3 [Browse all T4SS(s) in this replicon]
Accession	NC_004464
Location	34020..53620; 84148..88516
Name	Tra_I
Function	conjugation
Classification	Type IVB; Type I
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraH_I	TraI_I	TraJ_I	TraK_I	TraL_I	TraM_I	TraN_I	TraO_I	TraP_I
Number	1	1	1	1	1	1	1	1	1
Component	TraQ_I	TraR_I	TraS_I	TraT_I	TraU_I	TraV_I	TraW_I	TraX_I	TraY_I
Number	1	1	0	0	1	0	1	1	1
Component	TrbA_I	TrbB_I	TrbC_I
Number	1	1	1

The information of T4SS components from NC_004464
Region 1: 34020..53620

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pCTX-M3_047 (ssb)	29109..29543 [+], 435	27383476	hypothetical protein
2	pCTX-M3_048 (orf33)	29601..29912 [+], 312	27383477	hypothetical protein
3	pCTX-M3_049 (orf34)	30045..30581 [+], 537	27383478	hypothetical protein
4	pCTX-M3_050 (orf35)	31082..31447 [-], 366	27383479	hypothetical protein
5	pCTX-M3_051 (nikA)	31723..32040 [+], 318	27383480	NikA
6	pCTX-M3_052 (nikB)	32030..34006 [+], 1977	27383481	putative nickase
7	pCTX-M3_053 (traH)	34020..34520 [+], 501	27383482	hypothetical protein	TraH_I
8	pCTX-M3_054 (traI)	34517..35296 [+], 780	27383483	hypothetical protein	TraI_I
9	pCTX-M3_055 (traJ)	35307..36470 [+], 1164	27383484	hypothetical protein	TraJ_I
10	pCTX-M3_056 (traK)	36460..36720 [+], 261	27383485	hypothetical protein	TraK_I
11	pCTX-M3_057 (pri)	36745..39957 [+], 3213	27383486	DNA primase
12	pCTX-M3_058 (traL)	39923..40435 [+], 513	27383487	hypothetical protein	TraL_I
13	pCTX-M3_059 (orf36)	40386..41051 [+], 666	27383488	hypothetical protein
14	pCTX-M3_060 (traM)	41029..41811 [+], 783	27383489	hypothetical protein	TraM_I
15	pCTX-M3_061 (traN)	41820..42971 [+], 1152	27383490	hypothetical protein	TraN_I
16	pCTX-M3_062 (traO)	42983..44332 [+], 1350	27383491	TraO	TraO_I
17	pCTX-M3_063 (traP)	44344..45048 [+], 705	27383492	hypothetical protein	TraP_I
18	pCTX-M3_064 (traQ)	45072..45602 [+], 531	27383493	hypothetical protein	TraQ_I
19	pCTX-M3_065 (traR)	45619..46008 [+], 390	27383494	hypothetical protein	TraR_I
20	pCTX-M3_066 (orf37)	45675..46121 [-], 447	27383495	hypothetical protein
21	pCTX-M3_067 (orf38)	46054..46548 [+], 495	27383496	hypothetical protein
22	pCTX-M3_068 (traU)	46545..49595 [+], 3051	27383497	hypothetical protein	TraU_I
23	pCTX-M3_069 (traW)	49592..50800 [+], 1209	27383498	hypothetical protein	TraW_I
24	pCTX-M3_070 (traX)	50797..51447 [+], 651	27383499	hypothetical protein	TraX_I
25	pCTX-M3_071 (traY)	51440..53620 [+], 2181	27383500	hypothetical protein	TraY_I
26	pCTX-M3_072 (excA)	53623..54276 [+], 654	27383501	ExcA
27	pCTX-M3_073 (repC)	54351..54581 [+], 231	27383502	RepC
28	pCTX-M3_074 (repB)	54832..54882 [+], 51	27383534	hypothetical protein
29	pCTX-M3_075 (repA)	54879..55934 [+], 1056	27383503	hypothetical protein
30	pCTX-M3_076 (blaTEM1)	56938..57798 [-], 861	27383504	BlaTEM1

Region 2: 84148..88516

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pCTX-M3_098 (tnpIS26cp2)	79658..80362 [+], 705	27383510	transposase
2	pCTX-M3_099 (tnpATn1)	80487..83036 [+], 2550	27383525	hypothetical protein
3	pCTX-M3_100 (orf46)	83591..84100 [-], 510	27383526	putative transcriptional regulator
4	pCTX-M3_101 (trbC)	84148..86235 [-], 2088	27383527	hypothetical protein	TrbC_I
5	pCTX-M3_102 (trbB)	86248..87198 [-], 951	54145489	hypothetical protein	TrbB_I
6	pCTX-M3_103 (trbA)	87209..88516 [-], 1308	27383529	hypothetical protein	TrbA_I
7	pCTX-M3_104 (trbN)	88516..88911 [-], 396	27383530	putative lytic transglycosylase
8	pCTX-M3_105 (orf47)	89016..89366 [-], 351	27383531	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Golebiewski M; Kern-Zdanowicz I; Zienkiewicz M; Adamczyk M; Zylinska J; Baraniak A; Gniadkowski M; Bardowski J; Ceglowski P (2007). Complete nucleotide sequence of the pCTX-M3 plasmid and its involvement in spread of the extended-spectrum beta-lactamase gene blaCTX-M-3. Antimicrob Agents Chemother. 51(11):3789-95. [PudMed:17698626]