SecReT4

T4SS
References

T4SS ID	177
Strain	Pseudomonas syringae pv. tomato str. DC3000
Replicon	plasmid pDC3000B [Browse all T4SS(s) in this replicon]
Accession	NC_004632
Location	38589..66906
Name	Tra_I
Function	NA
Classification	Type IVB; Type I
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TraH_I	TraI_I	TraJ_I	TraK_I	TraL_I	TraM_I	TraN_I	TraO_I	TraP_I
Number	1	1	1	1	1	1	1	1	1
Component	TraQ_I	TraR_I	TraS_I	TraT_I	TraU_I	TraV_I	TraW_I	TraX_I	TraY_I
Number	1	1	0	0	1	0	1	1	1
Component	TrbA_I	TrbB_I	TrbC_I
Number	1	1	1

The information of T4SS components from NC_004632

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	PSPTO_B0043	34735..36081 [+], 1347	29171583	major facilitator family transporter
2	PSPTO_B0044	36137..36322 [+], 186	29171584	hypothetical protein
3	PSPTO_B0045	36339..36692 [-], 354	29171585	PbsX family transcriptional regulator
4	PSPTO_B0046	36937..37470 [+], 534	29171586	hypothetical protein
5	PSPTO_B0047	37460..37768 [+], 309	29171587	hypothetical protein
6	PSPTO_B0048	37786..38058 [+], 273	29171588	putative lipoprotein
7	PSPTO_B0049	38100..38552 [+], 453	29171589	pilT protein, putative
8	PSPTO_B0050	38589..39062 [+], 474	29171590	traH protein, putative	TraH_I
9	PSPTO_B0051	39059..39859 [+], 801	29171591	traI protein	TraI_I
10	PSPTO_B0052	39856..41037 [+], 1182	29171592	type IV pilus biogenesis protein	TraJ_I
11	PSPTO_B0053	41038..41733 [+], 696	29171593	hypothetical protein
12	PSPTO_B0054 (nuc)	41772..42281 [+], 510	29171594	endonuclease
13	PSPTO_B0055	42318..42563 [+], 246	29171595	hypothetical protein
14	PSPTO_B0056 (traK-1)	42592..42879 [+], 288	29171596	traK protein	TraK_I
15	PSPTO_B0057	42922..47595 [+], 4674	29171597	DNA primase TraC
16	PSPTO_B0058 (traL-1)	47621..47974 [+], 354	29171598	traL protein	TraL_I
17	PSPTO_B0059 (traM-1)	48001..48678 [+], 678	29171599	traM protein	TraM_I
18	PSPTO_B0060 (traN-1)	48735..49793 [+], 1059	29171600	traN protein	TraN_I
19	PSPTO_B0061 (traO-1)	49799..51157 [+], 1359	29171601	traO protein	TraO_I
20	PSPTO_B0062 (traP-1)	51154..51864 [+], 711	29171602	traP protein	TraP_I
21	PSPTO_B0063 (traQ-1)	51873..52415 [+], 543	29171603	traQ protein	TraQ_I
22	PSPTO_B0064 (traR-1)	52485..52886 [+], 402	29171604	traR protein	TraR_I
23	PSPTO_B0066 (traU-1)	53554..56610 [+], 3057	29171605	traU protein	TraU_I
24	PSPTO_B0067 (traW-1)	56621..57835 [+], 1215	29171606	traW protein	TraW_I
25	PSPTO_B0068 (traX-1)	57825..58427 [+], 603	29171607	traX protein	TraX_I
26	PSPTO_B0069 (traY-1)	58458..60602 [+], 2145	29171608	traY protein	TraY_I
27	PSPTO_B0070	60678..60950 [+], 273	29171609	hypothetical protein
28	PSPTO_B0071	60947..61594 [+], 648	29171610	surface exclusion protein, putative
29	PSPTO_B0072	61687..62889 [+], 1203	29171611	hypothetical protein	TrbA_I
30	PSPTO_B0073	62879..63256 [-], 378	29171612	PilT domain-containing protein
31	PSPTO_B0074	63253..63453 [-], 201	29171613	hypothetical protein
32	PSPTO_B0075	63546..64631 [+], 1086	29171614	trbB protein, putative	TrbB_I
33	PSPTO_B0076 (trbC)	64618..66906 [+], 2289	29171615	trbC protein	TrbC_I
34	PSPTO_B0077	66984..67412 [+], 429	29171616	GntR family transcriptional regulator

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Zhao Y; Ma Z; Sundin GW (2005). Comparative genomic analysis of the pPT23A plasmid family of Pseudomonas syringae. J Bacteriol. 187(6):2113-26. [PudMed:15743960]

This literature contains bioinformatics investigation