SecReT4

T4SS
References

T4SS ID	176
Strain	Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
Replicon	plasmid pHD5AT [Browse all T4SS(s) in this replicon]
Accession	NC_012752
Location	17231..44274
Name	Tra_I
Function	conjugation
Classification	Type IVB; Type I
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraH_I	TraI_I	TraJ_I	TraK_I	TraL_I	TraM_I	TraN_I	TraO_I	TraP_I
Number	1	1	1	1	1	1	1	1	1
Component	TraQ_I	TraR_I	TraS_I	TraT_I	TraU_I	TraV_I	TraW_I	TraX_I	TraY_I
Number	1	1	0	1	1	0	1	1	1
Component	TrbA_I	TrbB_I	TrbC_I
Number	1	1	1

The information of T4SS components from NC_012752

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	HDEF_p0012 (mobB)	12646..12954 [+], 309	238899355	MobB relaxase/mobilization protein
2	HDEF_p0013 (mobA)	12958..14850 [+], 1893	238899356	MobA relaxase/mobilization protein
3	HDEF_p0014 (hu)	14981..15322 [+], 342	238899357	DNA-binding protein
4	HDEF_p0015	15584..16510 [-], 927	238899358	putative transposase
5	HDEF_p0016 (trbC)	17231..21714 [-], 4484	238899359	TrbC conjugal transfer protein	TrbC_I
6	HDEF_p0018 (trbB)	21707..22639 [-], 933	238899360	TrbB conjugal transfer protein	TrbB_I
7	HDEF_p0019 (trbA)	22715..23824 [-], 1110	238899361	TrbA conjugal transfer protein	TrbA_I
8	HDEF_p0020	23920..24207 [+], 288	238899362	hypothetical protein
9	HDEF_p0021	24283..24558 [+], 276	238899363	hypothetical protein
10	HDEF_p0022	24581..25231 [-], 651	238899364	hypothetical protein
11	HDEF_p0023 (traY)	25287..27434 [-], 2148	238899365	TraY conjugal transfer protein	TraY_I
12	HDEF_p0024 (traX)	27536..28084 [-], 549	238899366	TraX conjugal transfer protein	TraX_I
13	HDEF_p0025 (traW)	28077..29270 [-], 1194	238899367	TraW conjugal transfer protein	TraW_I
14	HDEF_p0027 (traU)	29286..32375 [-], 3090	238899368	TraU conjugal transfer protein	TraU_I
15	HDEF_p0026	32341..32688 [+], 348	238899369	addiction module, toxin
16	HDEF_p0028	32703..32990 [+], 288	238899370	addiction module, antitoxin
17	HDEF_p0029 (traT)	33028..33630 [-], 603	238899371	TraT conjugal transfer protein	TraT_I
18	HDEF_p0030 (traR)	33660..34055 [-], 396	238899372	TraR conjugal transfer protein	TraR_I
19	HDEF_p0031 (traQ)	34103..34642 [-], 540	238899373	TraQ conjugal transfer protein	TraQ_I
20	HDEF_p0032 (traP)	34656..35558 [-], 903	238899374	TraP conjugal transfer protein	TraP_I
21	HDEF_p0033 (traO)	35434..36606 [-], 1173	238899375	TraO conjugal transfer protein	TraO_I
22	HDEF_p0034 (traN)	36610..37614 [-], 1005	238899376	TraN conjugal transfer protein	TraN_I
23	HDEF_p0035 (traM)	37611..38282 [-], 672	238899377	TraM conjugal transfer protein	TraM_I
24	HDEF_p0036 (traL)	38307..38696 [-], 390	238899378	TraL conjugal transfer protein	TraL_I
25	HDEF_p0037 (traC)	38749..41538 [-], 2790	238899379	DNA primase TraC
26	HDEF_p0038 (traK)	41553..41813 [-], 261	238899380	TraK conjugal transfer protein	TraK_I
27	HDEF_p0039 (traJ)	41875..43041 [-], 1167	238899381	TraJ conjugal transfer protein	TraJ_I
28	HDEF_p0041 (traI)	43028..43834 [-], 807	238899382	TraI conjugal transfer protein	TraI_I
29	HDEF_p0040 (traH)	43831..44274 [-], 444	238899383	TraH conjugal transfer protein	TraH_I
30	HDEF_p0042 (pilT)	44342..44806 [-], 465	238899384	PilT lytic transglycosylase, SLT domain protein
31	HDEF_p0043	44849..45475 [-], 627	238899385	hypothetical protein
32	HDEF_p0044 (pilM)	45472..45903 [-], 432	238899386	PilM type IV pilus biogenesis protein
33	HDEF_p0045 (pilV)	45953..47317 [-], 1365	238899387	PilV type IV pilus minor pilin subunit, shufflon protein
34	HDEF_p0046 (pilS2)	47458..47967 [-], 510	238899388	PilS2 type IV pilus biosynthesis protein
35	HDEF_p0047 (pilR)	47978..49042 [-], 1065	238899389	PilR type IV pilus biosynthesis protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Degnan PH; Yu Y; Sisneros N; Wing RA; Moran NA (2009). Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. Proc Natl Acad Sci U S A. 106(22):9063-8. [PudMed:19451630]