SecReT4
T4SS ID173
StrainSalmonella enterica subsp. enterica serovar Typhimurium plasmid R64 (NC_005014)
Repliconplasmid R64 [Browse all T4SS(s) in this replicon]
AccessionNC_005014
Location70127..98701
NameTra_I
Functionconjugation
ClassificationType IVB; Type I
experimental Experimental investigation has been performed on this T4SS.
structure Information of structure: structureTraM

T4SS components
ComponentTraH_ITraI_ITraJ_ITraK_ITraL_ITraM_ITraN_ITraO_ITraP_I
Number111111111
ComponentTraQ_ITraR_ITraS_ITraT_ITraU_ITraV_ITraW_ITraX_ITraY_I
Number111111111
ComponentTrbA_ITrbB_ITrbC_I
Number111

The information of T4SS components from NC_005014
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1R64_p078 (ygfB)65547..66395 [+], 84932470209hypothetical protein 
2R64_p079 (yggA)66480..66815 [-], 33632470210hypothetical protein 
3R64_p080 (nikA)67048..67380 [+], 33332470211hypothetical protein 
4R64_p081 (nikB)67391..70090 [+], 270032470212hypothetical protein 
5R64_p082 (trbC)70127..72418 [-], 229232470213hypothetical protein  TrbC_I
6R64_p083 (trbB)72411..73481 [-], 107132470214hypothetical protein  TrbB_I
7R64_p084 (trbA)73500..74708 [-], 120932470215hypothetical protein  TrbA_I
8R64_p085 (pndC)74942..75145 [+], 20432470216post-segregation killing protein 
9R64_p086 (pndA)75000..75152 [+], 15332470217post-segregation killing protein 
10R64_p087 (excB)76983..77645 [-], 66332470218surface exclusion protein 
11R64_p088 (excA)76983..77426 [-], 44432470219hypothetical protein 
12R64_p089 (traY)77716..79953 [-], 223832470220integral membrane protein  TraY_I
13R64_p090 (traX)79981..80565 [-], 58532470221hypothetical protein  TraX_I
14R64_p091 (traW)80594..81796 [-], 120332470222lipoprotein  TraW_I
15R64_p092 (traV)81763..82377 [-], 61532470223hypothetical protein  TraV_I
16R64_p093 (traU)82377..85421 [-], 304532470224nucleotide-binding protein  TraU_I
17R64_p094 (traT)85511..86311 [-], 80132470225hypothetical protein  TraT_I
18R64_p095 (traS)86295..86483 [-], 18932470226hypothetical protein  TraS_I
19R64_p096 (traR)86547..86951 [-], 40532470227hypothetical protein  TraR_I
20R64_p097 (traQ)87002..87529 [-], 52832470228hypothetical protein  TraQ_I
21R64_p098 (traP)87529..88233 [-], 70532470229hypothetical protein  TraP_I
22R64_p099 (traO)88233..89522 [-], 129032470230hypothetical protein  TraO_I
23R64_p100 (traN)89525..90508 [-], 98432470231hypothetical protein  TraN_I
24R64_p101 (traM)90519..91211 [-], 69332470232hypothetical protein  TraM_I
25R64_p102 (traL)91208..91555 [-], 34832470233hypothetical protein  TraL_I
26R64_p103 (sogL)91573..95340 [-], 376832470234DNA primase 
27R64_p104 (sogS)91573..94107 [-], 253532470235hypothetical protein 
28R64_p105 (nuc)95430..95981 [-], 55232470236EDTA-resistant nuclease 
29R64_p106 (traK)95996..96286 [-], 29132470237hypothetical protein  TraK_I
30R64_p107 (traJ)96283..97431 [-], 114932470238nucleotide-binding protein  TraJ_I
31R64_p108 (traI)97428..98246 [-], 81932470239lipoprotein  TraI_I
32R64_p109 (traH)98243..98701 [-], 45932470240lipoprotein  TraH_I
33R64_p110 (traG)99096..99680 [-], 58532470241hypothetical protein 
34R64_p111 (traF)99740..100942 [-], 120332470242hypothetical protein 
35R64_p112 (traE)101027..101851 [-], 82532470243hypothetical protein 
36R64_p113 (rci)102002..103156 [-], 115532470244shufflon-specific DNA reconbinase 
37R64_p114103221..103466 [+], 24632470245hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
The information on structure of this T4ss

#NameImageResourceDetailReference
1TraM3WZ3 PDB (3WZ3)Structure of a periplasmic fragment of TraM.(1) PubMed: 26039110
(1) Kuroda T et al. (2015). Molecular and structural analysis of Legionella DotI gives insights into an inner membrane complex essential for type IV secretion. Sci Rep. 5:10912. [PudMed:26039110] experimental
(1) Sampei G; Furuya N; Tachibana K; Saitou Y; Suzuki T; Mizobuchi K; Komano T (2010). Complete genome sequence of the incompatibility group I1 plasmid R64. Plasmid. 64(2):92-103. [PudMed:20594994]
(2) Komano T; Yoshida T; Narahara K; Furuya N (2000). The transfer region of IncI1 plasmid R64: similarities between R64 tra and legionella icm/dot genes. Mol Microbiol. 35(6):1348-59. [PudMed:10760136] experimental
(3) Furuya N; Komano T (1996). Nucleotide sequence and characterization of the trbABC region of the IncI1 Plasmid R64: existence of the pnd gene for plasmid maintenance within the transfer region. J Bacteriol. 178(6):1491-7. [PudMed:8626273] experimental
(4) Kim SR; Funayama N; Komano T (1993). Nucleotide sequence and characterization of the traABCD region of IncI1 plasmid R64. J Bacteriol. 175(16):5035-42. [PudMed:8349545] experimental
 
experimental This literature contains experimental investigation

Genomics & Bioinformatics Group in MML, SJTU