| Protein ID: 347430624 |
 T4SS name [ID] | VirB [26] |
| Gene symbol | virD4 |
| Locus tag | SLG_p_01120 |
| Strain | Sphingobium sp. SYK-6 |
| Replicon | plasmid pSLPG [GenBank: NC_015974] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 106060..108024 [+] |
| Product | type IV secretory pathway VirD4 component |
| Component type | VirD4 |
| UniProt ID | G2IU25 |
| KEGG ID | ssy:SLG_p_01120 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 2e-102, Aligned region: 111..536 TraG-D_C [PF12696], Evalue: 1.9e-26, Aligned region: 382..503 TrwB_AAD_bind [PF10412], Evalue: 1.1e-23, Aligned region: 173..512 |
| Protein Sequence: 654 a.a. [Download] |
| >gi|347430624|ref|YP_004831232.1| type IV secretory pathway VirD4 component [Sphingobium sp. SYK-6] MPVQRNFWIIGLSVAGGTLLCCAIAVPVALFGMGQIGPNTDITALPAWLWYYRADPLLILWLKRGALAGA VVVGLLAIGILRRGPALHGTARFAREGEIRREGLRDAAGIVVGRKAGRFLIFGGSEHVLLEAPTRAGKGV GVVIPNLLTWPDSVIVLDVKRENWGASAGYRARAGQAVHLFDPLDAEGRTARYNPLAHIRRTDDTEVINE LQKIAGMLFPAPERSDPFWAEAARAAFVGVGALVASNPGLPFTIGEIYRRLTSGDPKSDLPAALQEARRV GQRLSQACVSAIQDFTSASDNTFSGIKQTITARLNLWLNPMVDTATSESDFDLREVRRRRMSIYLGVSPD NIDRIAPIYSLFLQQLVDLNTRDLPEGASNVPVLVLLDEFARLGKASVIASGFSYVAGYGLRLVPVIQSR SQLRAIYGPDVTDEIIANCGLEVVFTPKELKVANELSERLGFFTMNVKSRSRTIHGLLANRSISESDQRR ALLLPQELMQLPKNELLLLRAGIPPIRGRKIAYYRMPRFTRRVVAPPVPSARPIAAMLSPPTPASARQGA GTPGLSGAPQQPATSSGETIQEEIVMREMTDAELAGAAKITDDMLVLGDLAELPPPGDEAAAIAFVSAMV ERALLPSVGQPSTSIIQERTAHVR |
| Nucleotide Sequence: 1965 bp [Download] |
| >gi|347430512|ref|NC_015974.1|:106060-108024 Sphingobium sp. SYK-6 plasmid pSLPG, complete sequence ATGCCGGTGCAGCGTAACTTCTGGATCATCGGCCTGTCCGTTGCCGGCGGCACCTTATTGTGCTGCGCCA TCGCCGTGCCAGTTGCCCTCTTTGGGATGGGCCAGATCGGCCCGAACACCGACATCACGGCCTTGCCCGC ATGGTTGTGGTACTATCGGGCGGACCCGCTGCTTATTCTTTGGCTAAAGCGCGGGGCTCTGGCGGGCGCT GTTGTGGTCGGGCTCCTCGCAATCGGGATTCTGCGCCGCGGGCCGGCATTGCACGGCACCGCCCGGTTTG CGCGCGAAGGCGAGATCCGGCGGGAGGGCCTTCGCGACGCTGCCGGCATCGTTGTCGGCCGCAAGGCTGG ACGTTTCCTGATATTCGGCGGGAGCGAGCATGTTCTGCTCGAGGCGCCCACGCGAGCGGGCAAGGGCGTG GGCGTCGTCATTCCCAATCTGCTGACCTGGCCAGATTCGGTGATCGTGCTCGACGTGAAGCGGGAGAACT GGGGCGCAAGCGCCGGCTATCGGGCACGGGCCGGCCAAGCAGTGCATCTGTTCGATCCGCTCGACGCGGA GGGGCGGACGGCGCGGTACAACCCCCTGGCGCACATCAGGCGGACTGATGACACCGAAGTCATCAACGAG CTGCAGAAGATCGCGGGCATGCTGTTCCCCGCGCCCGAGCGATCCGATCCCTTCTGGGCGGAGGCCGCGC GAGCGGCCTTTGTCGGCGTCGGCGCCCTGGTCGCATCCAACCCGGGCCTGCCCTTCACCATCGGCGAGAT ATACCGCCGCCTCACGAGCGGGGATCCCAAGAGCGACCTTCCCGCAGCGCTTCAGGAAGCTCGCAGGGTG GGCCAGCGCCTCAGCCAAGCTTGCGTGTCCGCGATCCAAGATTTCACCTCGGCCTCGGACAACACCTTTT CCGGGATCAAGCAGACCATCACCGCACGGCTCAATCTCTGGCTCAACCCCATGGTGGATACCGCCACCTC GGAGAGCGACTTCGACCTGCGCGAGGTGCGGCGTCGGCGCATGTCGATTTACCTTGGCGTGTCGCCTGAC AATATCGACCGCATCGCGCCGATCTACAGTCTGTTCCTGCAGCAACTCGTGGATCTCAACACCCGCGACC TTCCTGAGGGCGCTAGCAATGTCCCGGTCCTGGTCCTGCTCGACGAGTTCGCCAGGCTCGGCAAAGCCTC GGTGATTGCGAGCGGCTTCTCCTACGTCGCCGGCTATGGCCTGCGCCTGGTTCCGGTCATTCAGAGCCGA TCCCAGCTTCGCGCAATCTACGGTCCCGATGTCACCGACGAGATCATCGCCAATTGCGGCCTCGAGGTTG TCTTCACGCCTAAGGAGCTGAAGGTCGCGAACGAACTTTCCGAACGGCTCGGCTTTTTCACGATGAACGT GAAATCCCGCAGCCGTACCATCCACGGGCTACTGGCGAACCGGAGCATCTCGGAATCTGATCAGCGCCGC GCGCTCCTGCTGCCGCAAGAGCTCATGCAGCTGCCGAAGAACGAGCTCCTGCTCCTTCGCGCCGGCATCC CCCCAATTCGAGGGCGCAAGATCGCCTATTACCGGATGCCGCGCTTCACTCGGCGGGTGGTTGCTCCGCC TGTGCCGTCCGCCCGTCCAATCGCGGCAATGCTTTCCCCACCTACGCCGGCTTCAGCGCGGCAGGGCGCT GGTACACCCGGTCTGAGCGGCGCCCCACAGCAGCCGGCGACAAGCTCGGGCGAGACCATACAGGAGGAAA TTGTGATGCGGGAAATGACCGACGCCGAGCTGGCAGGTGCGGCCAAGATCACGGATGACATGCTGGTTCT GGGCGACCTGGCCGAACTGCCGCCCCCGGGCGACGAGGCCGCCGCGATCGCGTTCGTGTCGGCGATGGTC GAGCGGGCACTTTTGCCATCGGTCGGGCAGCCATCCACATCCATTATCCAGGAAAGGACAGCCCATGTCC GCTGA |