| Protein ID: 334143074 |
 T4SS name [ID] | VirB [27] |
| Gene symbol | - |
| Locus tag | PP1Y_Spl287 |
| Strain | Novosphingobium sp. PP1Y |
| Replicon | plasmid Spl [GenBank: NC_015582] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 27905..29638 [-] |
| Product | type IV secretion system protein VirD4 |
| Component type | VirD4 |
| UniProt ID | F6IBV9 |
| KEGG ID | npp:PP1Y_Spl287 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 1e-99, Aligned region: 51..500 TraG-D_C [PF12696], Evalue: 1.8e-26, Aligned region: 347..466 TrwB_AAD_bind [PF10412], Evalue: 9.9e-26, Aligned region: 263..477 AAA_10 [PF12846], Evalue: 2.1e-06, Aligned region: 106..426 |
| Protein Sequence: 577 a.a. [Download] |
| >gi|334143074|ref|YP_004537950.1| type IV secretion system protein VirD4 [Novosphingobium sp. PP1Y] MKVPGALWSMKSMPIVWQPFLLGFAISFALCLVGVFASMFSAQKLHGEARWARFGEVKDAGLLASAGIIL GRFNARFLRFGGTEHVMLEAPTRAGKGVGVVIPNLLSWPDSVVVLDVKQENWDLTSGYRAKELRQKTLLF NPLDGEGRTCRYNPLGHIDRRDPVEIINELQKIGAMLFPLPLTGDNFWAESARTAFLGVSAYVAATVDDG EDALPFTIGEVYRQFAAGDARRRFPKIIKQREQAGKPLSGACISALRDWISSSDNTFTSIRQSVTAKINL WLNPYVDAATAESDFDLRQFRDKRISLYLGVSPDDLERVAPIYNLLFQQLIDLNVRELPSSDRHNVRLLL LLDEFTRLGRASVIASGFSYVAGYGIRLLPVIQNFSQLDHIYGDKVAKEISANCGVQIVMRPKEINDAKN VSERLGTYTFRAKSRSFGAWGRGGGSVSESDQRRALLLPQELLLLPEKDLIVLRSGIPPVYGRKIRYYQE KDMLALTKVPAPAMPTIRPDPSVPARSLRVITAAEASGESDAVIPGASARPLNMPVVKALQATANHAPRQ TAHMLFKDLFSVMIPTA |
| Nucleotide Sequence: 1734 bp [Download] |
| >gi|334143044|ref|NC_015582.1|:c29638-27905 Novosphingobium sp. PP1Y plasmid Spl, complete sequence ATGAAAGTGCCGGGCGCGCTCTGGTCGATGAAATCCATGCCGATCGTCTGGCAACCGTTTCTTCTGGGCT TCGCGATCAGCTTTGCCTTGTGCCTGGTCGGCGTCTTCGCCTCGATGTTCTCGGCTCAAAAGCTGCACGG CGAGGCACGCTGGGCGCGCTTTGGCGAGGTGAAGGATGCTGGGCTTCTCGCAAGCGCCGGCATCATCCTT GGCCGTTTCAATGCCAGGTTTCTGCGCTTCGGCGGGACCGAGCATGTCATGCTCGAAGCCCCAACCCGGG CCGGCAAGGGCGTGGGCGTCGTGATCCCGAACCTGCTGTCCTGGCCCGATTCCGTCGTGGTCCTCGATGT GAAGCAGGAGAACTGGGACCTGACCTCAGGCTACCGCGCCAAGGAGCTTCGCCAGAAGACGCTCCTGTTC AACCCGCTCGACGGGGAAGGAAGGACATGCCGCTACAATCCGCTCGGCCATATCGACCGCCGCGATCCCG TCGAAATCATCAACGAGTTGCAGAAGATCGGAGCCATGCTGTTCCCGCTCCCCCTGACCGGCGACAATTT TTGGGCCGAAAGCGCGCGCACGGCCTTTCTCGGCGTCTCAGCTTATGTCGCGGCCACGGTCGATGATGGC GAGGACGCCCTGCCCTTCACGATCGGCGAGGTCTACCGCCAGTTCGCCGCTGGCGATGCCAGGCGCCGCT TCCCGAAGATCATCAAGCAGCGCGAACAGGCCGGAAAGCCTCTCTCGGGCGCGTGCATTTCTGCGCTGCG CGACTGGATTTCTTCGTCGGACAACACCTTCACGTCCATTCGCCAGTCCGTGACGGCCAAGATCAACCTT TGGCTCAACCCTTATGTCGACGCGGCAACGGCCGAGAGCGACTTCGATCTGCGCCAGTTTCGCGACAAGC GGATCTCGCTCTACCTCGGCGTTTCGCCCGACGACCTCGAGCGGGTCGCGCCGATCTACAACCTGCTCTT CCAACAGCTCATCGACCTCAACGTGCGCGAGCTGCCCTCATCCGACCGGCACAACGTGCGCCTACTCCTC CTGCTCGACGAGTTCACCCGCCTCGGCCGGGCCTCGGTTATCGCCAGCGGCTTCAGCTATGTGGCGGGCT ACGGCATCCGCCTCCTCCCCGTGATCCAGAACTTCTCCCAGCTCGATCACATCTACGGCGATAAGGTGGC CAAGGAGATCTCCGCGAACTGCGGCGTGCAGATCGTCATGCGACCCAAGGAGATCAACGACGCCAAGAAC GTCTCGGAGCGCCTGGGCACCTACACCTTTCGCGCCAAATCCCGTTCGTTCGGCGCCTGGGGCCGCGGCG GCGGTTCGGTGTCAGAATCCGATCAGCGCCGTGCGCTCCTGCTCCCGCAAGAGCTTCTCTTGCTGCCCGA AAAGGACCTGATCGTCCTGCGCTCGGGCATCCCGCCCGTCTACGGCAGGAAGATCCGGTACTATCAGGAG AAGGACATGCTCGCGCTGACGAAGGTGCCGGCTCCGGCGATGCCGACGATCCGGCCCGACCCTTCCGTTC CGGCGCGAAGCCTTCGCGTCATCACGGCTGCGGAGGCGAGTGGGGAAAGCGACGCGGTAATACCCGGAGC CAGCGCCAGGCCTCTAAACATGCCGGTGGTCAAAGCGCTTCAGGCGACAGCCAATCACGCCCCCCGGCAG ACGGCGCACATGTTGTTCAAGGACCTATTTTCCGTGATGATCCCAACAGCCTGA |