| Protein ID: 334139846 |
 T4SS name [ID] | Trb [288] |
| Gene symbol | - |
| Locus tag | PP1Y_AT2572 |
| Strain | Novosphingobium sp. PP1Y |
| Replicon | chromosome [GenBank: NC_015580] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 275204..277264 [+] |
| Product | type IV secretion system protein VirD4 |
| Component type | TraG |
| UniProt ID | F6IGG1 |
| KEGG ID | npp:PP1Y_AT2572 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 2.2e-103, Aligned region: 111..554 TraG-D_C [PF12696], Evalue: 3.2e-29, Aligned region: 401..521 TrwB_AAD_bind [PF10412], Evalue: 2e-26, Aligned region: 146..536 AAA_10 [PF12846], Evalue: 5.3e-09, Aligned region: 146..478 |
| Protein Sequence: 686 a.a. [Download] |
| >gi|334139846|ref|YP_004533045.1| type IV secretion system protein VirD4 [Novosphingobium sp. PP1Y] MNATRILWGQVIAVISVTLLGIWSATQWTAHALAHQPELGQPWFWLGPWPIYPPYAFFWWWFAFDAYAPQ IFQTGAFIAVSGVMAAIVIAIAMSVWRAREEKQSETYGSARWATDKEIRKAGLLKQDGVVIGSHKNRYLR HNGPEHILCFAPTRSGKGVGLVIPSLLAWPGSCIVHDIKGENWDLTAGFRARHGRVLLFDPTNPASNPYN PLLEVRKGDWEVRDAQNIADILIDPEGSLEKRTHWEKTSHSLLVGTILHVLYAEKDKSLAGVAGFLSDPR RSIETTLHRMKTTPHLGKDGVHPVVAAAAQELLNKSDNERSGVLSTAMSFLGLYRDPVIAQVTGASDWRI TDLVDSAAPVSLYLVIPPSDISRTKPLVRLMLNQIGRRLTEELKAKGRRQRVMFMLDEFPALGRLDFFES ALAFVAGYGIKAFLIAQSLNQIEKAYGSNNAILDNCHVRVAFAANDDNTASRVSNALGTATQMRAMKNYA GHRLSPWLGHIMVSRTETPRPLLTPGEVQQFSEHEEIVLVASTPPIRAEKAKYFLDPRFRARLLPAPTPK PLHPKKRPKDDWSALAPIAAPLPVKPAQAEAKSSEQPPVDQPKPDVPSDADGAESENDTANSGIRREPEL GEHEDVVPAPKPPVNEFDLDRDAPEDDAARAKREADRTMNRNARNASLDPDDGIDL |
| Nucleotide Sequence: 2061 bp [Download] |
| >gi|334139601|ref|NC_015580.1|:275204-277264 Novosphingobium sp. PP1Y chromosome, complete genome ATGAACGCCACCCGTATTCTTTGGGGTCAGGTCATCGCCGTCATCAGCGTTACTTTGCTTGGCATCTGGT CTGCCACCCAATGGACGGCCCACGCCCTTGCGCATCAACCCGAGCTCGGCCAGCCCTGGTTCTGGCTTGG ACCTTGGCCAATCTACCCGCCCTACGCCTTCTTCTGGTGGTGGTTTGCGTTTGACGCCTATGCACCACAG ATCTTCCAGACCGGGGCATTCATCGCGGTCTCGGGTGTCATGGCCGCCATAGTTATCGCGATCGCCATGT CGGTGTGGCGCGCGCGGGAGGAGAAGCAGTCAGAGACCTATGGTTCGGCTCGCTGGGCGACCGACAAGGA AATCCGCAAGGCTGGCCTCCTGAAACAGGACGGCGTGGTGATCGGCTCGCACAAGAACCGGTATCTGCGG CACAATGGCCCCGAGCATATTCTCTGCTTTGCGCCGACCCGTTCCGGCAAAGGCGTTGGTCTCGTCATCC CGTCGCTGCTCGCCTGGCCGGGCAGTTGCATCGTCCACGATATCAAAGGCGAGAACTGGGATCTGACGGC TGGCTTTCGCGCGCGGCATGGCCGCGTCCTGCTGTTCGATCCGACCAACCCCGCATCCAACCCCTACAAT CCGCTGCTCGAAGTCCGGAAGGGCGATTGGGAGGTGCGTGACGCCCAGAACATCGCAGACATATTGATCG ACCCCGAAGGGTCACTGGAAAAGCGCACGCATTGGGAGAAGACCAGCCACTCGCTACTCGTCGGCACCAT CCTGCACGTCCTCTATGCCGAGAAGGACAAGTCGCTGGCCGGGGTCGCTGGCTTCCTTTCCGATCCGCGT CGTTCGATAGAAACCACGCTGCACCGGATGAAGACGACCCCGCACCTCGGCAAAGATGGTGTTCACCCCG TTGTGGCTGCCGCAGCACAGGAACTGCTGAACAAGTCTGACAATGAGAGGTCTGGCGTCCTGTCGACGGC CATGTCGTTCCTCGGCCTCTACCGCGACCCTGTGATTGCGCAGGTCACCGGAGCCTCGGACTGGCGCATC ACCGATCTTGTCGATTCAGCGGCACCTGTGTCGCTCTATCTGGTCATTCCTCCTTCCGATATCAGCCGGA CCAAGCCGCTCGTCCGCCTGATGCTCAATCAGATCGGGCGCCGCTTGACCGAAGAGCTAAAGGCCAAGGG TCGCCGGCAGCGCGTGATGTTCATGCTCGATGAATTCCCGGCTTTGGGGCGGCTAGACTTCTTCGAAAGC GCACTGGCCTTTGTTGCAGGCTACGGGATCAAGGCATTCCTGATCGCGCAGTCGCTCAACCAGATTGAAA AAGCCTATGGGTCAAACAACGCCATTCTCGACAACTGCCACGTCCGCGTCGCGTTCGCGGCCAATGATGA CAATACCGCCAGCCGCGTTTCCAATGCGCTCGGCACCGCCACCCAGATGCGGGCGATGAAGAATTATGCC GGACATCGCCTTTCGCCATGGCTCGGCCATATCATGGTCTCGCGTACTGAGACCCCAAGGCCATTGTTGA CGCCTGGCGAAGTTCAGCAATTTTCGGAGCACGAGGAGATTGTGCTGGTGGCCAGCACGCCGCCGATCCG CGCGGAAAAGGCAAAATACTTTCTCGACCCGAGGTTCCGCGCGCGCCTTCTACCGGCACCCACACCCAAA CCGCTGCACCCGAAGAAACGGCCAAAGGACGACTGGTCTGCGCTCGCACCCATTGCGGCACCGCTGCCGG TCAAACCAGCCCAGGCCGAAGCGAAAAGCTCCGAACAGCCGCCTGTTGATCAGCCAAAGCCGGATGTGCC GTCAGATGCCGATGGGGCCGAATCCGAAAATGATACGGCAAACTCCGGGATCAGGCGAGAACCCGAACTG GGGGAACATGAGGATGTCGTTCCCGCCCCCAAGCCACCGGTCAACGAGTTCGATCTTGATCGCGATGCGC CCGAGGATGACGCAGCCAGGGCGAAACGGGAAGCTGATCGCACTATGAACCGCAATGCCCGCAATGCATC GCTCGACCCCGATGACGGCATCGACCTGTGA |