SecReT4
Protein ID: 294011988
T4SS name [ID]Trb [310]
Gene symbolvirD4
Locus tagSJA_C1-20020
StrainSphingobium japonicum UT26S
Repliconchromosome 1 [GenBank: NC_014006] [Browse all T4SS(s) in this replicon]
Location [Strand]1998064..2000055 [-]
Producttype IV secretory pathway VirD4 component
Component typeTraG
UniProt IDD4Z2K4
KEGG IDsjp:SJA_C1-20020
PDB IDNA
Domain hit(s) vs Pfam T4SS-DNA_transf [PF02534], Evalue: 1.1e-103, Aligned region: 109..556
TraG-D_C [PF12696], Evalue: 3.4e-31, Aligned region: 401..522
TrwB_AAD_bind [PF10412], Evalue: 3.7e-30, Aligned region: 171..536
AAA_10 [PF12846], Evalue: 3.6e-06, Aligned region: 146..478
Protein Sequence: 663 a.a.     [Download]
>gi|294011988|ref|YP_003545448.1| type IV secretory pathway VirD4 component [Sphingobium japonicum UT26S]
MPATKILWGQILAVLSIILVCVWGATEWVAWRLAFQPELGQPWFRLFGFPFYLPPAFFWWWYGYDAYAPS
IFVEGAYIAASGGFISVAVAIGMSVWRAREAKKVETYGSARWAERQEVQAAELLGADGVVLGRYDHDYLR
HDGPEHVLCFAPTRSGKGVGLVVPSLLTWPGSAIVHDIKGENWQLTAGFRAQHGRVLLFDPTNAKSAAYN
PLLEVRRGEWEVRDVQNIADILVDPEGSLEKRNHWEKTSHALLVGAILHVLYAEADKTLAGVAAFLSDPK
RPIESTLAAMMKTAHLGEAGAHPVIASAARELLNKSDNERSGVLSTAMSFLGLYRDPVVAEVTRRCDWRI
TDIVTARHPTTLYLVVPPSDINRTKPLIRLILNQVGRRLTEDLQAKAGRHRLLLMLDEFPALGRLDFFES
ALAFMAGYGLKSFLIAQSLNQIEKAYGANNSILDNCHVRVSFATNDERTAKRVSDALGTATEMKAMKNYA
GHRLSPWLGHLMVSRSETARPLLTPGEIMQLPPTDEIVMVAGTPPIRAKKARYYEDARFKERILPPPALV
APKQARPDHWTVLPLPPRPQLVEAKPAPESQGDDPTESERRQQPELNRVKPVEKKAPIENEFEIDADRDD
DMEDAAALNRRMTGIMQGVARQVSLDPNDGMEL
 
Nucleotide Sequence: 1992 bp     [Download]
>gi|294009986|ref|NC_014006.1|:c2000055-1998064 Sphingobium japonicum UT26S chromosome 1, complete genome
ATGCCCGCAACGAAAATTCTTTGGGGTCAGATCCTCGCCGTCCTCTCGATCATCCTCGTCTGCGTCTGGG
GCGCAACCGAGTGGGTCGCATGGCGTCTCGCATTCCAGCCGGAGCTTGGGCAGCCTTGGTTTCGGCTGTT
CGGCTTTCCCTTTTATCTGCCGCCCGCCTTTTTCTGGTGGTGGTATGGCTATGACGCCTATGCGCCGTCG
ATCTTCGTGGAGGGCGCCTATATCGCCGCGTCTGGCGGCTTTATCTCCGTGGCGGTCGCCATTGGAATGT
CGGTCTGGCGCGCGCGCGAGGCGAAAAAAGTCGAAACCTACGGCTCGGCGCGTTGGGCCGAACGACAGGA
GGTGCAGGCCGCCGAGCTTCTTGGCGCCGATGGCGTCGTGCTTGGCCGCTACGATCATGACTATCTTCGC
CACGACGGGCCGGAGCATGTGCTCTGCTTCGCCCCGACCAGGAGCGGCAAAGGTGTGGGTCTGGTCGTGC
CGTCGCTGCTCACCTGGCCGGGCTCGGCGATCGTCCACGACATCAAGGGCGAGAACTGGCAGCTCACGGC
CGGCTTCCGCGCTCAGCATGGCCGCGTGCTGCTGTTCGATCCGACCAATGCCAAGTCGGCGGCCTATAAT
CCACTGCTCGAGGTTCGCCGCGGCGAGTGGGAGGTGCGCGACGTCCAGAACATCGCCGACATCCTGGTCG
ATCCGGAAGGCAGCCTCGAAAAGCGAAACCACTGGGAGAAAACCAGCCACGCCCTTCTGGTCGGCGCGAT
CCTCCATGTCCTTTATGCCGAGGCGGACAAGACGCTCGCCGGCGTCGCCGCCTTCCTGTCCGACCCGAAG
CGACCGATCGAGTCAACGCTTGCCGCGATGATGAAGACGGCCCACCTCGGCGAGGCCGGGGCGCATCCCG
TCATCGCCAGCGCCGCGCGCGAGCTGCTGAACAAATCCGACAACGAACGGTCGGGCGTGCTTTCCACCGC
CATGTCCTTCCTCGGCCTCTACCGCGATCCGGTGGTGGCCGAAGTGACCCGGCGCTGCGATTGGCGGATC
ACCGACATCGTGACGGCCAGGCATCCGACGACGCTTTACCTTGTGGTGCCGCCCTCCGACATCAATCGCA
CCAAGCCGCTGATCCGCCTGATCCTCAATCAGGTCGGACGGCGTCTGACCGAAGACCTCCAGGCCAAAGC
CGGACGCCATCGGTTGCTCCTCATGCTCGATGAGTTCCCGGCGCTCGGTCGTCTCGACTTCTTCGAGTCA
GCCTTGGCCTTCATGGCGGGATATGGCTTGAAGAGCTTTCTGATCGCGCAGTCGCTGAACCAGATCGAGA
AAGCCTATGGTGCCAACAACTCGATCCTCGACAACTGCCATGTGCGCGTCAGCTTCGCCACCAACGACGA
ACGCACCGCCAAGCGTGTGTCCGACGCTCTCGGCACGGCGACCGAGATGAAGGCGATGAAGAACTATGCC
GGCCACCGGCTGTCGCCCTGGCTCGGGCATTTGATGGTGTCGCGCTCGGAAACCGCTCGGCCATTGCTTA
CTCCGGGCGAGATCATGCAGCTTCCGCCCACCGACGAGATCGTCATGGTGGCCGGTACGCCGCCGATCCG
GGCCAAGAAGGCCCGCTACTATGAGGATGCCCGATTCAAGGAGCGCATCCTGCCGCCACCGGCGCTGGTC
GCGCCGAAGCAAGCACGGCCTGACCACTGGACAGTCTTGCCACTGCCGCCACGGCCCCAACTCGTGGAGG
CGAAGCCTGCGCCTGAGAGTCAGGGCGATGACCCGACCGAATCCGAGCGCCGCCAGCAACCCGAACTCAA
CCGGGTGAAGCCGGTTGAGAAAAAGGCGCCTATCGAAAACGAGTTCGAGATCGATGCTGATCGCGACGAC
GACATGGAGGACGCCGCTGCGCTCAACAGGCGCATGACCGGGATCATGCAGGGCGTGGCGCGGCAGGTCT
CGCTCGATCCGAACGACGGCATGGAGCTGTGA