| Protein ID: 294011988 |
 T4SS name [ID] | Trb [310] |
| Gene symbol | virD4 |
| Locus tag | SJA_C1-20020 |
| Strain | Sphingobium japonicum UT26S |
| Replicon | chromosome 1 [GenBank: NC_014006] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 1998064..2000055 [-] |
| Product | type IV secretory pathway VirD4 component |
| Component type | TraG |
| UniProt ID | D4Z2K4 |
| KEGG ID | sjp:SJA_C1-20020 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 1.1e-103, Aligned region: 109..556 TraG-D_C [PF12696], Evalue: 3.4e-31, Aligned region: 401..522 TrwB_AAD_bind [PF10412], Evalue: 3.7e-30, Aligned region: 171..536 AAA_10 [PF12846], Evalue: 3.6e-06, Aligned region: 146..478 |
| Protein Sequence: 663 a.a. [Download] |
| >gi|294011988|ref|YP_003545448.1| type IV secretory pathway VirD4 component [Sphingobium japonicum UT26S] MPATKILWGQILAVLSIILVCVWGATEWVAWRLAFQPELGQPWFRLFGFPFYLPPAFFWWWYGYDAYAPS IFVEGAYIAASGGFISVAVAIGMSVWRAREAKKVETYGSARWAERQEVQAAELLGADGVVLGRYDHDYLR HDGPEHVLCFAPTRSGKGVGLVVPSLLTWPGSAIVHDIKGENWQLTAGFRAQHGRVLLFDPTNAKSAAYN PLLEVRRGEWEVRDVQNIADILVDPEGSLEKRNHWEKTSHALLVGAILHVLYAEADKTLAGVAAFLSDPK RPIESTLAAMMKTAHLGEAGAHPVIASAARELLNKSDNERSGVLSTAMSFLGLYRDPVVAEVTRRCDWRI TDIVTARHPTTLYLVVPPSDINRTKPLIRLILNQVGRRLTEDLQAKAGRHRLLLMLDEFPALGRLDFFES ALAFMAGYGLKSFLIAQSLNQIEKAYGANNSILDNCHVRVSFATNDERTAKRVSDALGTATEMKAMKNYA GHRLSPWLGHLMVSRSETARPLLTPGEIMQLPPTDEIVMVAGTPPIRAKKARYYEDARFKERILPPPALV APKQARPDHWTVLPLPPRPQLVEAKPAPESQGDDPTESERRQQPELNRVKPVEKKAPIENEFEIDADRDD DMEDAAALNRRMTGIMQGVARQVSLDPNDGMEL |
| Nucleotide Sequence: 1992 bp [Download] |
| >gi|294009986|ref|NC_014006.1|:c2000055-1998064 Sphingobium japonicum UT26S chromosome 1, complete genome ATGCCCGCAACGAAAATTCTTTGGGGTCAGATCCTCGCCGTCCTCTCGATCATCCTCGTCTGCGTCTGGG GCGCAACCGAGTGGGTCGCATGGCGTCTCGCATTCCAGCCGGAGCTTGGGCAGCCTTGGTTTCGGCTGTT CGGCTTTCCCTTTTATCTGCCGCCCGCCTTTTTCTGGTGGTGGTATGGCTATGACGCCTATGCGCCGTCG ATCTTCGTGGAGGGCGCCTATATCGCCGCGTCTGGCGGCTTTATCTCCGTGGCGGTCGCCATTGGAATGT CGGTCTGGCGCGCGCGCGAGGCGAAAAAAGTCGAAACCTACGGCTCGGCGCGTTGGGCCGAACGACAGGA GGTGCAGGCCGCCGAGCTTCTTGGCGCCGATGGCGTCGTGCTTGGCCGCTACGATCATGACTATCTTCGC CACGACGGGCCGGAGCATGTGCTCTGCTTCGCCCCGACCAGGAGCGGCAAAGGTGTGGGTCTGGTCGTGC CGTCGCTGCTCACCTGGCCGGGCTCGGCGATCGTCCACGACATCAAGGGCGAGAACTGGCAGCTCACGGC CGGCTTCCGCGCTCAGCATGGCCGCGTGCTGCTGTTCGATCCGACCAATGCCAAGTCGGCGGCCTATAAT CCACTGCTCGAGGTTCGCCGCGGCGAGTGGGAGGTGCGCGACGTCCAGAACATCGCCGACATCCTGGTCG ATCCGGAAGGCAGCCTCGAAAAGCGAAACCACTGGGAGAAAACCAGCCACGCCCTTCTGGTCGGCGCGAT CCTCCATGTCCTTTATGCCGAGGCGGACAAGACGCTCGCCGGCGTCGCCGCCTTCCTGTCCGACCCGAAG CGACCGATCGAGTCAACGCTTGCCGCGATGATGAAGACGGCCCACCTCGGCGAGGCCGGGGCGCATCCCG TCATCGCCAGCGCCGCGCGCGAGCTGCTGAACAAATCCGACAACGAACGGTCGGGCGTGCTTTCCACCGC CATGTCCTTCCTCGGCCTCTACCGCGATCCGGTGGTGGCCGAAGTGACCCGGCGCTGCGATTGGCGGATC ACCGACATCGTGACGGCCAGGCATCCGACGACGCTTTACCTTGTGGTGCCGCCCTCCGACATCAATCGCA CCAAGCCGCTGATCCGCCTGATCCTCAATCAGGTCGGACGGCGTCTGACCGAAGACCTCCAGGCCAAAGC CGGACGCCATCGGTTGCTCCTCATGCTCGATGAGTTCCCGGCGCTCGGTCGTCTCGACTTCTTCGAGTCA GCCTTGGCCTTCATGGCGGGATATGGCTTGAAGAGCTTTCTGATCGCGCAGTCGCTGAACCAGATCGAGA AAGCCTATGGTGCCAACAACTCGATCCTCGACAACTGCCATGTGCGCGTCAGCTTCGCCACCAACGACGA ACGCACCGCCAAGCGTGTGTCCGACGCTCTCGGCACGGCGACCGAGATGAAGGCGATGAAGAACTATGCC GGCCACCGGCTGTCGCCCTGGCTCGGGCATTTGATGGTGTCGCGCTCGGAAACCGCTCGGCCATTGCTTA CTCCGGGCGAGATCATGCAGCTTCCGCCCACCGACGAGATCGTCATGGTGGCCGGTACGCCGCCGATCCG GGCCAAGAAGGCCCGCTACTATGAGGATGCCCGATTCAAGGAGCGCATCCTGCCGCCACCGGCGCTGGTC GCGCCGAAGCAAGCACGGCCTGACCACTGGACAGTCTTGCCACTGCCGCCACGGCCCCAACTCGTGGAGG CGAAGCCTGCGCCTGAGAGTCAGGGCGATGACCCGACCGAATCCGAGCGCCGCCAGCAACCCGAACTCAA CCGGGTGAAGCCGGTTGAGAAAAAGGCGCCTATCGAAAACGAGTTCGAGATCGATGCTGATCGCGACGAC GACATGGAGGACGCCGCTGCGCTCAACAGGCGCATGACCGGGATCATGCAGGGCGTGGCGCGGCAGGTCT CGCTCGATCCGAACGACGGCATGGAGCTGTGA |