| Protein ID: 294010443 |
 T4SS name [ID] | VirB [28] |
| Gene symbol | virD4 |
| Locus tag | SJA_C1-04570 |
| Strain | Sphingobium japonicum UT26S |
| Replicon | chromosome 1 [GenBank: NC_014006] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 465718..467682 [-] |
| Product | type IV secretory pathway VirD4 component |
| Component type | VirD4 |
| UniProt ID | D4YY59 |
| KEGG ID | sjp:SJA_C1-04570 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 2e-103, Aligned region: 114..540 TraG-D_C [PF12696], Evalue: 2.1e-26, Aligned region: 382..503 TrwB_AAD_bind [PF10412], Evalue: 1.8e-23, Aligned region: 179..512 |
| Protein Sequence: 654 a.a. [Download] |
| >gi|294010443|ref|YP_003543903.1| type IV secretory pathway VirD4 component [Sphingobium japonicum UT26S] MPVQRSFWMIGLSVAGGTLLCCAIAVLVALFGLGQIGSHTDLTALPAWLWYYRTDPLLILWLKRGALAGA VVVGLLAIGILRRGPALHGTARFAREGEIRREGLRAASGIVVGRKAGRFLIFGGSEHVLLEAPTRAGKGV GVVIPNLLTWPDSVVVLDVKRENWGASAGYRARAGQAVHLFDPLDAEGRTARYNPLAHIRRTDDIEVVNE LQKIAGMLFPAPERSDPFWAEAARAAFVGVGALVASNPGLPFTIGEIYRRLTSGDPKSDLPATLQEARRV GQRLSQACVSAIQDFTSASDNTFSGIKQTITARLNLWLNPMVDAATSESDFDLREVRRRRMSIYLGVSPD NIDRIAPIYSLFLQQLVDLNTRDLPEGATNVPVLVLLDEFARLGKASVIASGFSYVAGYGLRLVPVIQSR SQLRAIYGPDVTDEIIANCGLEVVFTPKELKVANELSERLGFFTMSVKSRSRTIHGLLANRSISESDQRR ALLLPQELMQLPKSELLLLRAGIPPIRGRKIAYYRMPRFTRRVIAPPVLPARPIAAMLSSPTPALEQHGA GTPGLSGTRRQPATSSGNAIPEEIAMREMTEAELSGAAEITDDMLVLGDLAELPPPGDEAAAIAFVTAMV ERAVLPPTGSASTSLMQERAAHVR |
| Nucleotide Sequence: 1965 bp [Download] |
| >gi|294009986|ref|NC_014006.1|:c467682-465718 Sphingobium japonicum UT26S chromosome 1, complete genome ATGCCGGTGCAGCGTAGCTTCTGGATGATCGGCCTGTCCGTTGCCGGCGGCACCTTATTGTGCTGCGCCA TCGCCGTGCTGGTTGCCCTCTTTGGGCTGGGCCAGATCGGCTCTCACACCGACCTCACGGCCTTGCCCGC ATGGCTGTGGTACTATCGGACGGACCCACTGCTTATTCTTTGGCTAAAGCGCGGGGCGCTGGCGGGCGCA GTTGTGGTTGGGCTCCTCGCGATTGGGATTCTGCGCCGCGGGCCGGCATTGCACGGCACCGCCCGGTTTG CGCGCGAAGGCGAGATCCGGCGGGAGGGCCTTCGCGCCGCGTCCGGCATCGTTGTCGGCCGCAAGGCTGG ACGTTTCCTGATATTCGGCGGGAGCGAGCATGTTCTGCTCGAGGCACCCACACGAGCGGGCAAGGGCGTG GGCGTCGTCATTCCCAATCTGCTGACCTGGCCAGATTCGGTGGTCGTGCTCGACGTGAAACGGGAGAACT GGGGCGCAAGCGCCGGCTATCGTGCACGGGCCGGCCAGGCCGTGCATCTGTTCGATCCGCTCGACGCGGA GGGGCGGACGGCGCGGTACAACCCCCTGGCGCACATCAGACGGACTGATGACATAGAGGTCGTCAACGAG CTGCAGAAGATCGCGGGCATGCTTTTCCCCGCGCCCGAGCGATCCGATCCCTTCTGGGCGGAGGCCGCGC GAGCGGCCTTTGTCGGCGTCGGCGCCCTGGTCGCATCCAACCCGGGCCTGCCCTTCACCATCGGCGAGAT ATACCGCCGCCTCACGAGCGGGGATCCCAAGAGCGACCTTCCCGCAACGCTTCAGGAAGCCCGCAGGGTG GGCCAGCGCCTCAGCCAAGCGTGCGTGTCCGCGATCCAGGATTTCACCTCGGCCTCGGACAACACCTTTT CCGGGATCAAGCAGACCATCACCGCGCGGCTCAATCTCTGGCTCAACCCCATGGTGGATGCCGCCACCTC GGAAAGCGACTTCGACCTGCGCGAGGTACGGCGTCGGCGCATGTCGATTTACCTTGGCGTGTCGCCCGAC AATATCGACCGCATCGCGCCGATCTACAGCCTGTTCCTGCAGCAACTCGTGGATCTCAACACCCGCGATC TTCCTGAGGGCGCGACCAATGTCCCGGTCCTGGTCCTGCTCGACGAGTTCGCCAGGCTCGGCAAAGCCTC GGTGATTGCGAGCGGCTTTTCCTATGTCGCCGGCTATGGCCTACGTCTGGTCCCGGTCATTCAGAGCCGA TCCCAGCTTCGCGCAATCTATGGTCCCGATGTCACCGACGAGATCATCGCCAATTGCGGGCTCGAGGTTG TCTTCACGCCCAAGGAGCTAAAGGTCGCGAACGAACTTTCCGAACGGCTCGGCTTTTTCACGATGAGCGT GAAATCCCGCAGCCGCACCATCCACGGGCTGCTGGCGAACCGAAGCATCTCGGAATCCGACCAGCGCCGC GCACTCTTGCTGCCGCAGGAGCTGATGCAGCTACCCAAGAGCGAGCTCCTGCTCCTCCGCGCCGGCATCC CGCCCATTCGAGGTCGCAAGATTGCCTATTACCGGATGCCGCGCTTCACGCGGCGAGTGATCGCTCCGCC CGTGCTGCCCGCCCGTCCCATCGCGGCAATGCTTTCTTCCCCCACTCCGGCTTTAGAGCAGCACGGTGCT GGCACGCCTGGGCTGAGTGGCACCCGCCGGCAACCGGCGACGAGCTCGGGGAACGCCATACCGGAGGAAA TTGCGATGCGGGAAATGACCGAGGCCGAGCTTTCAGGCGCGGCAGAGATCACGGACGACATGCTGGTTCT GGGTGACCTGGCCGAACTGCCGCCGCCGGGCGACGAGGCTGCCGCAATCGCCTTCGTGACGGCGATGGTC GAGCGGGCAGTTTTACCACCGACCGGATCGGCATCCACGTCCCTCATGCAGGAAAGGGCAGCCCATGTCC GCTGA |