| Protein ID: 222102338 |
 T4SS name [ID] | VirB [786] |
| Gene symbol | avhD4 |
| Locus tag | Avi_9810 |
| Strain | Agrobacterium vitis S4 |
| Replicon | plasmid pAtS4a [GenBank: NC_011986] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 10420..12519 [-] |
| Product | conjugative coupling protein |
| Component type | VirD4 |
| UniProt ID | B9K5Y6 |
| KEGG ID | avi:Avi_9810 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 3.4e-89, Aligned region: 119..535 TrwB_AAD_bind [PF10412], Evalue: 3.2e-31, Aligned region: 127..518 TraG-D_C [PF12696], Evalue: 1.1e-28, Aligned region: 382..504 AAA_10 [PF12846], Evalue: 6.4e-06, Aligned region: 132..459 |
| Protein Sequence: 699 a.a. [Download] |
| >gi|222102338|ref|YP_002546479.1| conjugative coupling protein [Agrobacterium vitis S4] MTKGFKAVYLAFCLAVAFAAWMLGYGAGLHLFYGDGRILDTTIRSNPFAPIQQFWAYSDNPTLQKVALGS LVPAFVIAAITAYLGLRPVTSPLGDAAFQDIAGLRMGKWFGKKGHIFGGFGGKVLRAQDDRHHLIIGPTR SGKGAGYVIPNALMHEGSMIVTDLKGEVFRATAGYRKKNGSQVFIFAPGSERTNSYNPLDFVRPERGNRT TDIQNIASILVPENTESENSVWQAIAQNVIAGAISYMLESPFYHDRRNLGEINSFFNSGMDLQALMKHIK EKEPYLSKFTVESFNSYISLSDRAAASALLDIQKAMRPFKNERVVAATNFTDMDLRAMKRRPITIYLAPN ITDITLLRPLLTLFVQQVMNILTLEHDPNSVPVYFLLDEFRQLKRMDEIMTKLPYVAGYNIKLAFIIQDL KNLDEIYGETSRHSLLGNCGYQLILGANDQATADYASRALGKRTIRYSSESRTIEIMGLPRRTKVEQIRE RDLMMSQEVRQMPENRMILLVEGQRPIFAEKLRFFNTQPFKAAEAYAQAHIPSVPDIEYLPSKPVPATTA EYENAGNVAPVAEPSAAVQTNIPEAGPAQKEPEKQIPAAEAPEPAQATAPAAPPAKRTVNPAALTSKTKA TPAARPKAPKRNSSTSDDIARRKEIEALQSLAVQRLREQVEKASAGKNPTKRKNIMDVFAATVPDPETA |
| Nucleotide Sequence: 2100 bp [Download] |
| >gi|222102329|ref|NC_011986.1|:c12519-10420 Agrobacterium vitis S4 plasmid pAtS4a, complete sequence ATGACGAAGGGCTTCAAAGCCGTCTACCTAGCGTTTTGCCTCGCGGTTGCCTTTGCGGCCTGGATGCTTG GATATGGCGCTGGCCTTCACCTTTTTTACGGCGATGGCAGGATCCTCGATACAACGATACGAAGCAATCC TTTCGCGCCAATCCAACAGTTCTGGGCTTACAGCGATAATCCTACCCTGCAGAAGGTCGCCCTGGGGTCA TTGGTGCCTGCCTTCGTGATCGCCGCAATTACTGCATATCTCGGCCTTAGGCCAGTCACGAGCCCATTAG GGGACGCCGCGTTTCAGGACATCGCGGGTTTGCGGATGGGGAAATGGTTCGGCAAGAAGGGGCATATTTT CGGTGGTTTTGGAGGCAAGGTCCTCCGGGCGCAGGACGATCGCCATCACCTGATCATCGGGCCGACAAGG TCCGGTAAAGGTGCCGGTTACGTCATTCCGAATGCTCTCATGCATGAAGGCTCGATGATCGTTACCGACT TGAAGGGCGAGGTCTTCAGGGCGACGGCCGGCTATCGGAAGAAGAATGGCAGCCAGGTCTTCATTTTCGC GCCGGGGTCGGAGCGCACGAACAGCTACAATCCGCTCGATTTTGTGAGACCAGAACGGGGCAATCGAACA ACCGACATTCAAAATATCGCCAGCATTCTTGTCCCGGAGAACACGGAGTCGGAAAACTCGGTATGGCAAG CGATCGCGCAAAACGTCATTGCAGGCGCAATAAGCTACATGCTGGAAAGCCCATTCTACCACGACCGCCG CAATCTTGGCGAAATCAACTCCTTCTTCAACAGCGGCATGGATCTCCAGGCTTTGATGAAGCACATCAAA GAGAAAGAACCTTACCTCTCGAAGTTTACAGTCGAGAGTTTCAACTCATATATCTCATTGTCTGATCGAG CCGCTGCATCAGCCCTTCTTGATATCCAGAAGGCTATGCGACCCTTCAAGAACGAACGCGTTGTCGCAGC AACGAACTTCACCGACATGGACCTTCGTGCCATGAAGCGGCGGCCTATAACGATCTATCTCGCCCCGAAC ATCACTGACATCACGCTTCTCAGGCCCTTGCTGACCCTGTTTGTCCAGCAGGTCATGAACATTCTCACGC TCGAACACGATCCAAATTCTGTACCCGTCTATTTCCTCCTCGATGAGTTTCGCCAGCTGAAACGCATGGA TGAGATCATGACGAAGCTGCCCTATGTGGCCGGTTACAACATCAAGCTCGCTTTCATCATTCAGGATCTT AAAAACCTCGATGAGATATATGGGGAGACCTCGCGGCACTCGCTCTTGGGGAATTGCGGCTATCAGTTGA TCCTTGGTGCAAATGATCAGGCCACGGCCGACTATGCGTCACGAGCTCTGGGCAAAAGGACCATTCGCTA TTCCTCAGAGTCTCGCACCATAGAAATAATGGGACTTCCACGGCGAACGAAGGTCGAGCAAATTCGCGAG CGAGACCTCATGATGTCTCAGGAGGTCCGGCAAATGCCGGAAAATAGAATGATCCTGCTGGTAGAGGGCC AGCGTCCGATCTTTGCCGAAAAGCTTCGGTTCTTCAACACGCAGCCATTCAAAGCTGCTGAAGCCTATGC CCAGGCTCACATCCCAAGCGTTCCGGATATTGAGTACCTTCCATCGAAGCCGGTCCCGGCGACGACTGCA GAATATGAGAATGCGGGAAACGTAGCGCCGGTAGCTGAGCCTTCGGCTGCAGTCCAAACGAACATACCGG AAGCCGGTCCCGCTCAGAAAGAACCGGAAAAGCAGATTCCTGCAGCGGAGGCGCCGGAGCCAGCGCAAGC CACAGCGCCGGCCGCCCCTCCAGCGAAGCGCACCGTCAACCCCGCGGCGTTGACCTCGAAAACCAAAGCC ACGCCCGCAGCCCGGCCGAAAGCCCCGAAGCGCAATAGCTCAACGTCAGATGACATCGCACGGCGAAAGG AAATAGAAGCGCTGCAATCTCTTGCAGTACAAAGGCTTCGCGAACAGGTCGAGAAAGCCAGCGCCGGAAA GAACCCGACGAAGCGGAAAAACATCATGGACGTTTTCGCTGCAACCGTTCCAGATCCAGAGACAGCCTGA |