| Protein ID: 159046527 |
 T4SS name [ID] | VirB [469] |
| Gene symbol | - |
| Locus tag | Dshi_3988 |
| Strain | Dinoroseobacter shibae DFL 12 |
| Replicon | plasmid pDSHI03 [GenBank: NC_009957] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 48594..50606 [-] |
| Product | TRAG family protein |
| Component type | VirD4 |
| UniProt ID | A8LU08 |
| KEGG ID | dsh:Dshi_3988 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 5e-87, Aligned region: 131..545 TraG-D_C [PF12696], Evalue: 4.2e-28, Aligned region: 390..511 TrwB_AAD_bind [PF10412], Evalue: 6.7e-18, Aligned region: 139..525 AAA_10 [PF12846], Evalue: 1.7e-08, Aligned region: 138..471 |
| Protein Sequence: 670 a.a. [Download] |
| >gi|159046527|ref|YP_001542197.1| TRAG family protein [Dinoroseobacter shibae DFL 12] MSAAMGKVRIATGVLLVTLVTGAMGYTIASAVLTYQDLGFGAEIDFAYIAQNYLAILDRRPEDAQLIHLI IGSFAAAGMMLSLALSGSALTRFGQTHWQTSREMKANGFFGAPGTGFILGKLGAPGSRANYICSTVFPHA LIVAPTGRGKTTGFVIPNLLTWQGSAVTLDVKGECFEATARHRAAQGDKVYRFAPTDWESKRTHRYNPLL RIYQLKDPARQQMELQLLATLFLQSDNDRVQGLLKGGIDLFVAAGLLAFQRKRPTLGEIYRIAASGGNKQ KEYFARGHEVENRAAKLIFTRLASTNNDTLTSYVSLLMTSGLDQWQNPAIDEATAVSDFDFRTIRKKPFS VYLVVQPLMVKPLAPLIRLFFSDLLSAMQEKDPGPDEPWPVMIMLDEFNRLGKMPIVVESIETLRTYRGH LAVVTQTIPALDEIYGENTRRALQGNAGVKLYLTPSDEKTVEELSKAVGKTTKTVVTRSQSIGKNPFEGR SQSTRTEESSLLPEDEARRLPLDEIVMVIDAQMPVRAKRIQYFDDRLFKAIHAAQTGELPFPEPGGGGPQ GNLSLSMRAMPMTPPPDGPRGSEADVERAREVVDGQPSGQSDVVPKKTTPVVQAVIAEEQRQMEMDFGGQ LADVETVGVDDDAQMRSAVDGLDEMEAMLQEDGGERLVAR |
| Nucleotide Sequence: 2013 bp [Download] |
| >gi|159046469|ref|NC_009957.1|:c50606-48594 Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence TTGAGCGCCGCCATGGGAAAAGTCCGGATCGCCACGGGCGTCCTGCTCGTGACGCTGGTGACAGGGGCCA TGGGCTATACCATCGCCTCGGCGGTGCTGACCTACCAGGACCTTGGCTTCGGGGCCGAGATCGACTTTGC CTATATCGCGCAGAACTATCTGGCGATCCTCGATCGCCGCCCGGAGGACGCCCAACTCATCCACCTGATC ATCGGTAGCTTCGCCGCCGCCGGTATGATGCTGAGCCTCGCCCTGTCGGGGTCCGCGCTCACACGCTTTG GCCAGACCCATTGGCAGACCTCCCGCGAGATGAAGGCCAATGGGTTCTTCGGCGCGCCCGGGACGGGATT CATCCTCGGTAAACTTGGGGCGCCGGGCTCCCGCGCCAACTACATCTGCTCGACGGTCTTTCCCCATGCG CTGATCGTGGCCCCCACGGGTCGCGGCAAGACCACGGGTTTTGTCATTCCGAACCTGCTCACCTGGCAAG GCTCTGCCGTGACGCTCGATGTGAAGGGCGAGTGTTTCGAGGCCACGGCGCGGCACCGCGCAGCCCAGGG CGACAAGGTCTATCGCTTTGCTCCCACGGATTGGGAGAGCAAGCGCACCCATCGCTACAACCCGCTCCTG CGCATCTATCAACTGAAAGATCCTGCGCGCCAGCAGATGGAACTGCAGCTCTTGGCGACGCTGTTCCTGC AGAGTGACAACGACCGGGTGCAGGGCCTCCTTAAGGGCGGGATCGATCTCTTCGTGGCGGCAGGGCTTTT GGCCTTCCAGCGCAAGCGCCCGACCTTGGGCGAGATTTACCGCATCGCTGCCTCGGGCGGGAACAAGCAG AAGGAGTATTTTGCGCGCGGCCACGAGGTGGAGAACAGGGCCGCCAAGCTGATCTTCACGCGTCTGGCCT CGACCAACAACGACACGCTGACCTCATACGTTTCGCTCCTGATGACCTCGGGGCTCGATCAATGGCAGAA CCCTGCGATCGATGAGGCGACGGCGGTGTCGGACTTTGATTTCCGGACGATCCGCAAGAAGCCCTTTTCG GTCTACCTCGTGGTCCAGCCGCTGATGGTGAAGCCGCTTGCGCCGCTGATCCGGCTGTTTTTCTCCGATC TTCTCTCGGCCATGCAGGAAAAGGACCCCGGGCCGGATGAGCCTTGGCCCGTGATGATCATGCTCGATGA GTTCAATCGCCTTGGCAAAATGCCGATCGTAGTCGAGAGCATCGAAACCCTGCGGACCTATCGTGGCCAT CTGGCCGTAGTGACACAAACCATCCCCGCCCTCGATGAAATCTACGGCGAGAACACCCGCCGTGCGCTGC AGGGCAATGCCGGCGTGAAACTGTACCTGACGCCCTCGGATGAGAAAACTGTCGAGGAACTGAGTAAGGC GGTTGGCAAGACCACGAAGACCGTGGTCACGCGCTCCCAATCCATCGGCAAGAACCCCTTCGAAGGTCGC AGCCAGTCCACAAGGACCGAAGAAAGCTCTCTGCTCCCTGAAGATGAAGCGCGCCGCCTTCCGCTCGATG AGATCGTCATGGTCATCGATGCCCAAATGCCGGTCCGTGCGAAGCGGATCCAGTATTTTGACGATCGGCT GTTCAAGGCGATCCACGCGGCGCAGACCGGCGAGTTGCCGTTTCCGGAGCCGGGGGGAGGGGGGCCGCAA GGCAATCTGTCGTTGAGTATGCGCGCCATGCCGATGACGCCGCCACCGGACGGCCCGCGTGGATCTGAAG CAGATGTGGAGAGGGCACGCGAGGTCGTTGACGGTCAACCGTCAGGGCAATCTGATGTAGTTCCAAAGAA GACCACGCCTGTCGTTCAAGCCGTTATCGCCGAGGAACAGCGCCAGATGGAGATGGATTTTGGGGGACAG CTTGCGGATGTCGAGACAGTGGGGGTGGATGATGATGCGCAGATGCGCTCCGCCGTTGATGGGTTGGACG AAATGGAAGCGATGCTGCAAGAGGACGGTGGTGAAAGGCTGGTTGCTCGATAG |