| Protein ID: 150378111 |
 T4SS name [ID] | VirB [17] |
| Gene symbol | - |
| Locus tag | Smed_6143 |
| Strain | Sinorhizobium medicae WSM419 |
| Replicon | plasmid pSMED02 [GenBank: NC_009621] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 1070183..1071829 [+] |
| Product | type IV secretion system protein VirD4 |
| Component type | VirD4 |
| UniProt ID | A6UM93 |
| KEGG ID | smd:Smed_6143 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 4.6e-151, Aligned region: 82..522 TraG-D_C [PF12696], Evalue: 3.1e-28, Aligned region: 376..494 TrwB_AAD_bind [PF10412], Evalue: 1.6e-25, Aligned region: 120..507 AAA_10 [PF12846], Evalue: 9.5e-08, Aligned region: 125..449 |
| Protein Sequence: 548 a.a. [Download] |
| >gi|150378111|ref|YP_001314706.1| type IV secretion system protein VirD4 [Sinorhizobium medicae WSM419] MCSLAVGYCGASAYSTFRFGFDGRALMTFDILAFWYETPFYLGYTTLFFYRGLAVVVLTSAAILLVQQMV SVRDRQHHGTARWARVDEMRRAGYLQRYSRISGPVFGKTSGPFWSDYYLTNSEQPHSLIVAPTRAGKGVG IVIPTLLTFEGSVIALDVKGELFDLTSRARKARGDSVFKLAPLDPERRTNCYNPLLDILALPSERQFTEA RRLAANLIATKGQSAEGFINGARDLFVAGILACIERGTPTIGAVYDLFAQPGEKYSLFARLAQETQNKEA QRIFDEMASNDTKILTSYTSVLGDGGLNLWADPLIKAATSRSDFSIYDLRRRRTCIYLCVSPNDLEVVAP LMRLLFQQVVSILQRSLPGKDEKHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGTY DESGKQNFLSNTGVQVFMATADDETPVYISKAIGEYTFQARSTSYTQSLTFDRNIQHSDQGAPLLRPEQV RLLPDKYQIVLIKGQPPLQLRKVRYYSDRALKRIFDSQTGRLPEPAPLMIADERFSHV |
| Nucleotide Sequence: 1647 bp [Download] |
| >gi|150377168|ref|NC_009621.1|:1070183-1071829 Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence ATGTGTTCACTGGCAGTAGGTTATTGTGGGGCAAGCGCCTACTCAACGTTCCGTTTTGGTTTTGATGGAA GGGCTTTGATGACATTTGACATCCTCGCTTTTTGGTATGAGACGCCTTTCTATCTGGGATACACAACTCT CTTCTTCTATAGGGGTTTGGCTGTCGTCGTCTTAACGTCGGCAGCCATTCTGCTCGTTCAGCAGATGGTA TCCGTGCGCGATCGGCAACATCACGGTACTGCACGCTGGGCTCGCGTGGATGAAATGCGGCGCGCGGGTT ATCTTCAGCGGTACAGCCGCATCAGTGGACCGGTGTTCGGAAAGACGAGCGGGCCTTTTTGGTCTGACTA CTACCTGACCAATAGCGAGCAGCCTCACAGCCTCATCGTTGCGCCGACGCGCGCGGGAAAAGGCGTCGGC ATTGTAATTCCAACGCTACTAACGTTCGAGGGCTCAGTGATAGCCCTCGACGTTAAGGGCGAGCTCTTTG ATCTCACTTCTAGGGCTCGCAAAGCGCGGGGCGATAGCGTGTTCAAATTGGCACCGCTAGACCCCGAGCG GCGGACGAATTGCTATAATCCTCTATTGGATATCCTAGCATTGCCGTCAGAGCGGCAGTTCACCGAAGCG CGTCGTTTGGCGGCAAACCTCATTGCGACCAAGGGACAGAGTGCGGAAGGTTTCATCAACGGCGCACGAG ATCTTTTTGTCGCCGGCATTCTTGCCTGCATCGAGCGCGGTACGCCAACCATCGGGGCCGTCTACGACCT CTTTGCTCAGCCAGGGGAGAAATATAGCCTTTTTGCGCGTCTTGCGCAGGAGACCCAGAATAAGGAGGCT CAGCGGATCTTCGATGAAATGGCGAGTAATGATACAAAGATTCTGACCTCCTACACTTCTGTGCTCGGTG ATGGCGGGCTGAACTTATGGGCCGACCCGCTGATTAAAGCGGCGACAAGCCGATCGGACTTCTCAATCTA CGACCTGCGACGTCGCAGGACATGCATTTATCTTTGCGTCAGCCCAAACGATCTTGAGGTGGTCGCGCCT CTGATGCGCCTGCTCTTCCAGCAGGTCGTTTCAATTCTGCAACGCTCGCTGCCCGGCAAGGACGAGAAGC ACGAAGTGCTATTCCTGCTCGATGAATTCAAGCATCTTGGTAAGCTCGAGGCGATTGAGACTGCAATCAC CACGATCGCGGGCTACAAGGGCCGTTTTATGTTCATTATCCAAAGTCTCTCGGCACTGACCGGAACATAC GACGAATCTGGAAAGCAGAATTTCCTCAGCAATACTGGTGTGCAGGTCTTTATGGCAACAGCTGACGATG AGACACCGGTTTATATTTCGAAAGCCATCGGTGAATATACATTCCAAGCGCGCTCAACTTCCTATACCCA AAGCCTTACGTTCGATCGCAATATTCAACACTCAGATCAAGGAGCACCTTTATTAAGGCCAGAACAGGTG CGTCTACTACCCGACAAGTACCAGATCGTTCTCATTAAGGGTCAGCCACCATTGCAACTACGAAAGGTAC GATATTATTCCGATCGCGCACTGAAGCGCATCTTTGATAGCCAGACGGGCAGGCTTCCGGAGCCAGCACC CCTGATGATTGCAGACGAGAGATTTAGCCACGTCTAG |