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IME
Gene list
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References
I. Information of IME
ICEberg ID
9_IME
Name
GI
Vch
Hai3
Family
-
Organism
Vibrio cholerae
HE-09
Size (bp)
13611 bp
GC content [Genome] (%)
Insertion site
-
Function
-
Species that IME can be transferred to
-
Nucleotide Sequence
AFOP01000111.1
(partical IME sequence)
Putative
oriT
region
-
Putative relaxase
-
II. IME interaction with ICE/CIME/Plasmids
The interaction information of GI
Vch
Hai3 is not available.
The graph information of GI
Vch
Hai3 components from
AFOP01000111
Incomplete gene list of GI
Vch
Hai3 from
AFOP01000111
#
Gene
Coordinates [+/-], size (bp)
Product
*Reannotation
1
VCHE09_0205
27747..28436 [-], 690
hypothetical protein
2
VCHE09_0206
28669..30669 [-], 2001
eukaryotic and archaeal DNA primase small subunit
3
cro
31103..31474 [-], 372
transcriptional regulator, XRE family
4
VCHE09_0208
31506..31808 [-], 303
hypothetical protein
5
VCHE09_0209
32344..33594 [-], 1251
phage integrase
Integrase
6
VCHE09_0210
33788..34654 [-], 867
hypothetical protein
7
rph
34818..35534 [+], 717
ribonuclease PH
8
VCHE09_0212
35690..35736 [+], 47
hypothetical protein
Flanking regions
Gene may contribute to site-specific recombination
Element
No. of sequences
Download
Nucleotide sequences
1
Fasta
Proteins
1
Fasta
(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands.
J Bacteriol
. 195(3):606-14. [
PudMed:23204461
]
(2) Hasan NA; Choi SY; Eppinger M; Clark PW; Chen A; Alam M; Haley BJ; Taviani E; Hine E; Su Q; Tallon LJ; Prosper JB; Furth K; Hoq MM; Li H; Fraser-Liggett CM; Cravioto A; Huq A; Ravel J; Cebula TA; Colwell RR (2012). Genomic diversity of 2010 Haitian cholera outbreak strains.
Proc Natl Acad Sci U S A
. 109(29):E2010-7. [
PudMed:22711841
]
experimental literature
in silico analysis literature