I. Information of IME
Name GIVchHai3 This is a predicted IME derived from literature
OrganismVibrio cholerae HE-09
Size (bp)13611 bp
GC content [Genome] (%)
Insertion site-
Species that IME can be transferred to-
Nucleotide SequenceAFOP01000111.1 (partical IME sequence)
Putative oriT region -
Putative relaxase -

II. IME interaction with ICE/CIME/Plasmids

The interaction information of GIVchHai3 is not available.

The graph information of GIVchHai3 components from AFOP01000111
Incomplete gene list of GIVchHai3 from AFOP01000111
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1VCHE09_020527747..28436 [-], 690hypothetical protein
2VCHE09_020628669..30669 [-], 2001eukaryotic and archaeal DNA primase small subunit
3cro31103..31474 [-], 372transcriptional regulator, XRE family
4VCHE09_020831506..31808 [-], 303hypothetical protein
5VCHE09_020932344..33594 [-], 1251phage integraseIntegrase 
6VCHE09_021033788..34654 [-], 867hypothetical protein
7rph34818..35534 [+], 717ribonuclease PH
8VCHE09_021235690..35736 [+], 47hypothetical protein
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461] experimental in_silico
(2) Hasan NA; Choi SY; Eppinger M; Clark PW; Chen A; Alam M; Haley BJ; Taviani E; Hine E; Su Q; Tallon LJ; Prosper JB; Furth K; Hoq MM; Li H; Fraser-Liggett CM; Cravioto A; Huq A; Ravel J; Cebula TA; Colwell RR (2012). Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci U S A. 109(29):E2010-7. [PudMed:22711841]
experimental experimental literature
in_silico in silico analysis literature