 ICEberg ID | 9_IME |
Name  | GIVchHai3  |
| Family | - |
| Organism | Vibrio cholerae HE-09 |
| Size (bp) | 13611 bp |
| GC content [Genome] (%) | |
| Insertion site | - |
| Function | - |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | AFOP01000111.1 (partical IME sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of GIVchHai3 components from AFOP01000111 | |||||
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| Incomplete gene list of GIVchHai3 from AFOP01000111 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | VCHE09_0205 | 27747..28436 [-], 690 | hypothetical protein | ||
| 2 | VCHE09_0206 | 28669..30669 [-], 2001 | eukaryotic and archaeal DNA primase small subunit | ||
| 3 | cro | 31103..31474 [-], 372 | transcriptional regulator, XRE family | ||
| 4 | VCHE09_0208 | 31506..31808 [-], 303 | hypothetical protein | ||
| 5 | VCHE09_0209 | 32344..33594 [-], 1251 | phage integrase | Integrase | |
| 6 | VCHE09_0210 | 33788..34654 [-], 867 | hypothetical protein | ||
| 7 | rph | 34818..35534 [+], 717 | ribonuclease PH | ||
| 8 | VCHE09_0212 | 35690..35736 [+], 47 | hypothetical protein | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461] 
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| (2) Hasan NA; Choi SY; Eppinger M; Clark PW; Chen A; Alam M; Haley BJ; Taviani E; Hine E; Su Q; Tallon LJ; Prosper JB; Furth K; Hoq MM; Li H; Fraser-Liggett CM; Cravioto A; Huq A; Ravel J; Cebula TA; Colwell RR (2012). Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci U S A. 109(29):E2010-7. [PudMed:22711841] |
| experimental literature |
| in silico analysis literature |