ICEberg
I. Information of IME
ICEberg ID5_IME
Name ermF region  This IME is derived from experimental literature
Family-
OrganismBacteroides thetaiotaomicron
Size (bp)13 kb
GC content [Genome] (%)
Insertion site-
FunctionermF (clindamycin, erythromycin)
Species that IME can be transferred to-
Nucleotide SequenceAJ311171 (complete IME sequence in this contig)
Replicon-
Coordinates2672..15432
Putative oriT region -
Putative relaxase coordinates: 7955..8866; Gene: mobA;  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The Interaction Network among ICE/IME/CIME/plasmid


Detailed Informatioin of the Interaction Network
# IME  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1ermF region  CTnDOT [ICE] experimentalin trans Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron 11472924
2ermF region  CTnERL [ICE] experimentalin trans Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron 11472924

experimental This is an interactioin derived from experimental literature


The graph information of ermF region  components from AJ311171
Complete gene list of ermF region  from AJ311171
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1intDOT847..2082 [+], 1236integrase protein
2-2095..2457 [+], 363hypothetical protein
3intF2672..4006 [+], 1335putative integrase
4-4011..4196 [+], 186hypothetical protein
5-5172..5471 [+], 300hypothetical protein
6-5649..6518 [+], 870hypothetical protein
7prmF6589..7542 [+], 954hypothetical protein
8mobB7612..7974 [+], 363MobB protein
9mobA7955..8866 [+], 912MobA proteinRelaxase 
10-8871..9464 [+], 594hypothetical protein
11aadS9763..10599 [-], 837aminoglycoside 6-adenylyltransferase
12tetX210775..11941 [-], 1167TetX2 proteinAR 
13tetX112110..13189 [-], 1080TetX1 protein
14ermF13555..14355 [+], 801rRNA adenine-N6 methyltransferaseAR 
15tpnF14593..15432 [+], 840TpnF proteinIntegrase 
16-15901..16218 [-], 318hypothetical protein
17-16249..16734 [-], 486hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins13Fasta
(1) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]
(2) Whittle G; Hund BD; Shoemaker NB; Salyers AA (2001). Characterization of the 13-kilobase ermF region of the Bacteroides conjugative transposon CTnDOT. Appl Environ Microbiol. 67(8):3488-95. [PudMed:11472924] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU