 ICEberg ID | 3_IME |
Name  | cLV25  |
| Family | - |
| Organism | Bacteroides fragilis LV25 |
| Size (bp) | 15.3 kb |
| GC content [Genome] (%) | |
| Insertion site | - |
| Function | - |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | AY053505 (complete IME sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 1..15343 |
| Putative oriT region | - |
| Putative relaxase | coordinates: 5281..6207; Gene: bmgA; Family: MOBP |
The Interaction Network among ICE/IME/CIME/plasmid | ||||||
 | ||||||
| Detailed Informatioin of the Interaction Network | ||||||
| # | IME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | cLV25 | R751 [IncP plasmid] | in trans | E. coli HB101 R751 | E. coli DW1030 | 11889096 |
| This is an interactioin derived from experimental literature |
The graph information of cLV25 components from AY053505 | |||||
 | |||||
| Complete gene list of cLV25 from AY053505 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | - | 292..822 [+], 531 | unknown | ||
| 2 | - | 852..3143 [+], 2292 | unknown | ||
| 3 | - | 2648..2977 [-], 330 | unknown | ||
| 4 | - | 3156..3407 [+], 252 | unknown | ||
| 5 | - | 3428..3667 [+], 240 | unknown | ||
| 6 | - | 4144..4503 [+], 360 | unknown | ||
| 7 | - | 4557..5276 [-], 720 | unknown | ||
| 8 | bmgA | 5281..6207 [-], 927 | mobilization protein BmgA | Relaxase | |
| 9 | bmgB | 6173..6556 [-], 384 | mobilization protein BmgB | ||
| 10 | - | 6704..7669 [-], 966 | DNA primase | ||
| 11 | - | 7130..7429 [+], 300 | unknown | ||
| 12 | - | 7833..8906 [-], 1074 | unknown | ||
| 13 | - | 8173..8460 [+], 288 | unknown | ||
| 14 | - | 8577..8822 [+], 246 | unknown | ||
| 15 | - | 8912..9199 [-], 288 | putative excisionase | ||
| 16 | - | 9502..10233 [-], 732 | unknown | ||
| 17 | - | 9675..9956 [-], 282 | unknown | ||
| 18 | - | 9787..10107 [+], 321 | unknown | ||
| 19 | - | 9903..10157 [+], 255 | unknown | ||
| 20 | - | 10731..11954 [+], 1224 | putative integrase | Integrase | |
| 21 | - | 11187..11462 [-], 276 | unknown | ||
| 22 | - | 11980..13116 [+], 1137 | unknown | ||
| 23 | - | 13361..13933 [+], 573 | unknown | ||
| 24 | - | 13943..14506 [+], 564 | unknown | ||
| 25 | - | 14671..15039 [+], 369 | unknown | ||
| 26 | - | 15070..15343 [+], 274 | unknown | ||
 Gene may contribute to site-specific recombination |
 Gene may play role in conjugative transfer |
| (1) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381] |
| (2) Bass KA; Hecht DW (2002). Isolation and characterization of cLV25, a Bacteroides fragilis chromosomal transfer factor resembling multiple Bacteroides sp. mobilizable transposons. J Bacteriol. 184(7):1895-904. [PudMed:11889096] |