ICEberg
I. Information of IME
ICEberg ID31_IME
Name IME_SagA909_tRNAlys This is a predicted IME derived from literature
Family-
OrganismStreptococcus agalactiae A909
Size (bp)18.47 kb
GC content [Genome] (%)
Insertion site3' tRNAlys
Function-
Species that IME can be transferred to-
Nucleotide SequenceCP000114 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of IME_SagA909_tRNAlys is not available.


The graph information of IME_SagA909_tRNAlys components from CP000114
Incomplete gene list of IME_SagA909_tRNAlys from CP000114
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1SAK_19331934944..1935414 [-], 471acetyltransferase, GNAT family
2SAK_19341935386..1935844 [-], 459hydrolase, NUDIX family
3SAK_19351935837..1936145 [-], 309conserved hypothetical protein
4SAK_19361936188..1936658 [-], 471conserved hypothetical protein
5SAK_19371936894..1937475 [+], 582acetyltransferase, GNAT family
6SAK_19381937468..1938736 [+], 1269ATPase, AAA family
7SAK_19401939326..1940435 [-], 1110hypothetical protein
8SAK_19411940575..1940784 [-], 210hypothetical protein
9SAK_19421940873..1941013 [-], 141hypothetical protein
10SAK_19431941036..1942166 [-], 1131site-specific recombinase, phage integrase familyIntegrase 
11SAK_19441942170..1942355 [-], 186conserved hypothetical protein
12SAK_19451942416..1943444 [-], 1029replication initiation factor family protein
13SAK_19461943447..1943866 [-], 420conserved domain protein
14SAK_19471944192..1944365 [-], 174hypothetical protein
15SAK_19481944822..1945316 [+], 495transcriptional regulator, putative
16SAK_19491945603..1946553 [-], 951conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins1Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Coluzzi C; Guedon G; Devignes MD; Ambroset C; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2017). A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Front Microbiol. 0.640972222. [PudMed:28373865]
(3) Puymege A; Bertin S; Guedon G; Payot S (2015). Analysis of Streptococcus agalactiae pan-genome for prevalence, diversity and functionality of integrative and conjugative or mobilizable elements integrated in the tRNA(Lys CTT) gene. Mol Genet Genomics. 290(5):1727-40. [PudMed:25832353] experimental in_silico
(4) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]
(5) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU