 ICEberg ID | 31_IME |
Name  | IME_SagA909_tRNAlys  |
| Family | - |
| Organism | Streptococcus agalactiae A909 |
| Size (bp) | 18.47 kb |
| GC content [Genome] (%) | |
| Insertion site | 3' tRNAlys |
| Function | - |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | CP000114 (partical IME sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of IME_SagA909_tRNAlys components from CP000114 | |||||
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| Incomplete gene list of IME_SagA909_tRNAlys from CP000114 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | SAK_1933 | 1934944..1935414 [-], 471 | acetyltransferase, GNAT family | ||
| 2 | SAK_1934 | 1935386..1935844 [-], 459 | hydrolase, NUDIX family | ||
| 3 | SAK_1935 | 1935837..1936145 [-], 309 | conserved hypothetical protein | ||
| 4 | SAK_1936 | 1936188..1936658 [-], 471 | conserved hypothetical protein | ||
| 5 | SAK_1937 | 1936894..1937475 [+], 582 | acetyltransferase, GNAT family | ||
| 6 | SAK_1938 | 1937468..1938736 [+], 1269 | ATPase, AAA family | ||
| 7 | SAK_1940 | 1939326..1940435 [-], 1110 | hypothetical protein | ||
| 8 | SAK_1941 | 1940575..1940784 [-], 210 | hypothetical protein | ||
| 9 | SAK_1942 | 1940873..1941013 [-], 141 | hypothetical protein | ||
| 10 | SAK_1943 | 1941036..1942166 [-], 1131 | site-specific recombinase, phage integrase family | Integrase | |
| 11 | SAK_1944 | 1942170..1942355 [-], 186 | conserved hypothetical protein | ||
| 12 | SAK_1945 | 1942416..1943444 [-], 1029 | replication initiation factor family protein | ||
| 13 | SAK_1946 | 1943447..1943866 [-], 420 | conserved domain protein | ||
| 14 | SAK_1947 | 1944192..1944365 [-], 174 | hypothetical protein | ||
| 15 | SAK_1948 | 1944822..1945316 [+], 495 | transcriptional regulator, putative | ||
| 16 | SAK_1949 | 1945603..1946553 [-], 951 | conserved hypothetical protein | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
| (1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361] |
| (2) Coluzzi C; Guedon G; Devignes MD; Ambroset C; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2017). A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Front Microbiol. 0.640972222. [PudMed:28373865] |
(3) Puymege A; Bertin S; Guedon G; Payot S (2015). Analysis of Streptococcus agalactiae pan-genome for prevalence, diversity and functionality of integrative and conjugative or mobilizable elements integrated in the tRNA(Lys CTT) gene. Mol Genet Genomics. 290(5):1727-40. [PudMed:25832353] 
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| (4) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381] |
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(5) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498]
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| experimental literature |
| in silico analysis literature |