 ICEberg ID | 26_IME |
Name  | IME_Sag2603_rpsl  |
| Family | - |
| Organism | Streptococcus agalactiae 2603V/R |
| Size (bp) | 9.04 kb |
| GC content [Genome] (%) | |
| Insertion site | 3' rpsI long_DR |
| Function | arsR (arsenate reductase) |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | AE009948 (partical IME sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of IME_Sag2603_rpsl components from AE009948 | |||||
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| Incomplete gene list of IME_Sag2603_rpsl from AE009948 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | SAG0208 | 227216..227602 [+], 387 | conserved hypothetical protein | ||
| 2 | SAG0209 | 227705..228460 [+], 756 | RNA methyltransferase, TrmH family, group 3 | ||
| 3 | SAG0210 | 228457..228975 [+], 519 | conserved hypothetical protein | ||
| 4 | SAG0211 | 229068..229928 [+], 861 | DegV family protein | ||
| 5 | SAG0212 | 230061..230159 [+], 99 | hypothetical protein | ||
| 6 | SAG0213 | 230273..230392 [+], 120 | hypothetical protein | ||
| 7 | rplM | 230809..231255 [+], 447 | ribosomal protein L13 | ||
| 8 | rpsI | 231276..231668 [+], 393 | ribosomal protein S9 | ||
| 9 | SAG0216 | 231682..231783 [-], 102 | hypothetical protein | ||
| 10 | SAG0217 | 231796..232950 [-], 1155 | site-specific recombinase, phage integrase family | Integrase | |
| 11 | SAG0218 | 233015..233491 [-], 477 | transcriptional regulator, Cro/CI family | ||
| 12 | SAG0219 | 233645..233950 [+], 306 | hypothetical protein | ||
| 13 | SAG0220 | 234087..234365 [+], 279 | conserved hypothetical protein | ||
| 14 | SAG0221 | 234376..234606 [+], 231 | hypothetical protein | ||
| 15 | SAG0222 | 234619..234945 [+], 327 | conserved domain protein | ||
| 16 | SAG0223 | 234949..235578 [+], 630 | conserved hypothetical protein, fusion | ||
| 17 | SAG0224 | 235768..236766 [+], 999 | replication initiation protein, putative | ||
| 18 | SAG0225 | 236802..237236 [+], 435 | hypothetical protein | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
| (1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361] |
| (2) Coluzzi C; Guedon G; Devignes MD; Ambroset C; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2017). A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Front Microbiol. 0.640972222. [PudMed:28373865] |
| (3) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381] |
(4) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] 
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| experimental literature |
| in silico analysis literature |