ICEberg
I. Information of IME
ICEberg ID26_IME
Name IME_Sag2603_rpsl This is a predicted IME derived from literature
Family-
OrganismStreptococcus agalactiae 2603V/R
Size (bp)9.04 kb
GC content [Genome] (%)
Insertion site3' rpsI long_DR
FunctionarsR (arsenate reductase)
Species that IME can be transferred to-
Nucleotide SequenceAE009948 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of IME_Sag2603_rpsl is not available.


The graph information of IME_Sag2603_rpsl components from AE009948
Incomplete gene list of IME_Sag2603_rpsl from AE009948
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1SAG0208227216..227602 [+], 387conserved hypothetical protein
2SAG0209227705..228460 [+], 756RNA methyltransferase, TrmH family, group 3
3SAG0210228457..228975 [+], 519conserved hypothetical protein
4SAG0211229068..229928 [+], 861DegV family protein
5SAG0212230061..230159 [+], 99hypothetical protein
6SAG0213230273..230392 [+], 120hypothetical protein
7rplM230809..231255 [+], 447ribosomal protein L13
8rpsI231276..231668 [+], 393ribosomal protein S9
9SAG0216231682..231783 [-], 102hypothetical protein
10SAG0217231796..232950 [-], 1155site-specific recombinase, phage integrase familyIntegrase 
11SAG0218233015..233491 [-], 477transcriptional regulator, Cro/CI family
12SAG0219233645..233950 [+], 306hypothetical protein
13SAG0220234087..234365 [+], 279conserved hypothetical protein
14SAG0221234376..234606 [+], 231hypothetical protein
15SAG0222234619..234945 [+], 327conserved domain protein
16SAG0223234949..235578 [+], 630conserved hypothetical protein, fusion
17SAG0224235768..236766 [+], 999replication initiation protein, putative
18SAG0225236802..237236 [+], 435hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins1Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Coluzzi C; Guedon G; Devignes MD; Ambroset C; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2017). A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Front Microbiol. 0.640972222. [PudMed:28373865]
(3) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]
(4) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU