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IME
Gene list
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References
I. Information of IME
ICEberg ID
260_IME
Name
SGI1-K1
Family
-
Organism
Salmonella enterica
subsp.
enterica
serovar Kentucky
Size (bp)
-
GC content [Genome] (%)
Insertion site
3'-end of the
trmE
Function
aadA7
,
sul1
,
mer
,
tetR
,
tet
(A),
pecM
,
tnpA
,
strB
,
strA
,
bla
TEM-1
Species that IME can be transferred to
-
Nucleotide Sequence
EU664602
(partical IME sequence)
Putative
oriT
region
-
Putative relaxase
-
II. IME interaction with ICE/CIME/Plasmids
The interaction information of SGI1-K1 is not available.
The graph information of SGI1-K1 components from
EU664602
Incomplete gene list of SGI1-K1 from
EU664602
#
Gene
Coordinates [+/-], size (bp)
Product
*Reannotation
1
orfB
1334..2206 [-], 873
putative transposase
Integrase
2
orfA
2203..2547 [-], 345
putative transposase
3
S010
2798..3052 [-], 255
hypothetical protein
4
S011
3052..3112 [-], 61
putative pilus assembly protein
5
merR
3213..3322 [+], 110
merR repressor protein
6
tetR
3528..4178 [-], 651
tetracycline resistance repressor protein
7
tet(A)
4284..5483 [+], 1200
tetracycline resistance efflux pump
AR
8
pecM
5515..6399 [-], 885
PecM like protein
9
tnpA
6888..8684 [+], 1797
transposase protein
10
strB
9223..10059 [-], 837
APH(6)-Id
AR
11
strA
10059..10862 [-], 804
APH(3'')-Ib
AR
12
orfB
10969..11826 [-], 858
putative transposase
13
orfA
11823..12098 [-], 276
putative transposase
14
tnpA
12726..13430 [+], 705
putative transposase
15
tnpR
13669..14226 [+], 558
putative resolvase protein
16
blaTEM-1
14408..15268 [+], 861
TEM-1
AR
17
tnpA
15729..16433 [-], 705
putative transposase protein
Gene may contribute to site-specific recombination
Gene may be involved in adaptative function
Element
No. of sequences
Download
Nucleotide sequences
1
Fasta
Proteins
17
Fasta
(1) Doublet B; Praud K; Bertrand S; Collard JM; Weill FX; Cloeckaert A (2008). Novel insertion sequence- and transposon-mediated genetic rearrangements in genomic island SGI1 of Salmonella enterica serovar Kentucky.
Antimicrob Agents Chemother
. 52(10):3745-54. [
PudMed:18676889
]