ICEberg
I. Information of IME
ICEberg ID25_IME
Name IME_Sag2603_rpmG This is a predicted IME derived from literature
Family-
OrganismStreptococcus agalactiae 2603V/R
Size (bp)8.62 kb
GC content [Genome] (%)
Insertion site3' rpmG adjacent
Function-
Species that IME can be transferred to-
Nucleotide SequenceAE009948 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of IME_Sag2603_rpmG is not available.


The graph information of IME_Sag2603_rpmG components from AE009948
Incomplete gene list of IME_Sag2603_rpmG from AE009948
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1SAG21062086560..2087504 [-], 945conserved hypothetical protein
2aspS2087494..2089245 [-], 1752aspartyl-tRNA synthetase
3hisS2089338..2090618 [-], 1281histidyl-tRNA synthetase
4rpmF2090838..2091020 [+], 183ribosomal protein L32
5rpmG-32091036..2091185 [+], 150ribosomal protein L33
6SAG21112091333..2091854 [-], 522conserved hypothetical protein
7SAG21122091952..2093436 [-], 1485site-specific recombinase, phage integrase familyIntegrase 
8SAG21132093446..2093694 [-], 249conserved hypothetical protein
9SAG21142093760..2094788 [-], 1029conserved hypothetical protein
10SAG21152094791..2095222 [-], 432hypothetical protein
11SAG21162095498..2095953 [-], 456conserved hypothetical protein
12SAG21172095953..2096168 [-], 216hypothetical protein
13SAG21182096491..2097411 [+], 921transcriptional regulator, Cro/CI family
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins1Fasta
(1) Coluzzi C; Guedon G; Devignes MD; Ambroset C; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2017). A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Front Microbiol. 0.640972222. [PudMed:28373865]
(2) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]
(3) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU