ICEberg
I. Information of IME
ICEberg ID259_IME
Name SGI1-J6 This is a predicted IME derived from literature
Family-
OrganismSalmonella enterica subsp. enterica serovar Kentucky
Size (bp)-
GC content [Genome] (%)
Insertion site-
FunctionaadA2, floR2, tetRG)-tetA(G), and sul1
Species that IME can be transferred to-
Nucleotide SequenceJQ796373 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-J6 is not available.


The graph information of SGI1-J6 components from JQ796373
Incomplete gene list of SGI1-J6 from JQ796373
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1tnpA491..1522 [-], 1032transposase
2intI12521..3302 [-], 782class 1 integraseIntegrase 
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins2Fasta
(1) Le Hello S; Weill FX; Guibert V; Praud K; Cloeckaert A; Doublet B (2012). Early strains of multidrug-resistant Salmonella enterica serovar Kentucky sequence type 198 from Southeast Asia harbor Salmonella genomic island 1-J variants with a novel insertion sequence. Antimicrob Agents Chemother. 56(10):5096-102. [PudMed:22802251]
 

Genomics & Bioinformatics Group in MML, SJTU