ICEberg
I. Information of IME
ICEberg ID258_IME
Name SGI1-J5 This is a predicted IME derived from literature
Family-
OrganismSalmonella enterica subsp. enterica serovar Virchow
Size (bp)-
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceHM236854 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-J5 is not available.


The graph information of SGI1-J5 components from HM236854
Incomplete gene list of SGI1-J5 from HM236854
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1tnpA1..667 [+], 667transposaseIntegrase 
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins1Fasta
(1) Chu C; Doublet B; Lee YL; Cloeckaert A; Chiou CS; Chen SW; Lin CW; Chiu CH (2012). Salmonella genomic island 1-J variants associated with change in the antibiotic resistance gene cluster in multidrug-resistant Salmonella enterica serovar Virchow isolated from humans, Taiwan, 2004-2006. Clin Microbiol Infect. 18(1):47-53. [PudMed:21615827]
 

Genomics & Bioinformatics Group in MML, SJTU