ICEberg
I. Information of IME
ICEberg ID256_IME
Name SGI1-J3 This is a predicted IME derived from literature
Family-
OrganismSalmonella enterica subsp. enterica serovar Virchow
Size (bp)-
GC content [Genome] (%)
Insertion site-
FunctionfloR2, tetR, tet(G), sul1
Species that IME can be transferred to-
Nucleotide SequenceEU924797 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-J3 is not available.


The graph information of SGI1-J3 components from EU924797
Incomplete gene list of SGI1-J3 from EU924797
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1intI11382..1775 [-], 394IntI1Integrase 
2tnpA1876..2507 [+], 632transposase protein
3tniA3001..4683 [-], 1683transposase protein
4S0245430..5647 [-], 218putative exonuclease protein
5res5748..5837 [-], 90putative resolvase protein
6S0446045..6421 [+], 377unknown
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins6Fasta
(1) Doublet B; Chu C; Chiu CH; Fan YC; Cloeckaert A (2009). Truncated tni module adjacent to the complex integron of salmonella genomic island 1 in Salmonella enterica serovar Virchow. Antimicrob Agents Chemother. 53(2):824-7. [PudMed:19015337]
 

Genomics & Bioinformatics Group in MML, SJTU