ICEberg

IME
Gene list
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References

I. Information of IME

ICEberg ID	248_IME
Name	Tn6106
Family	-
Organism	Clostridium difficile R20291
Size (bp)	11.3 kb
GC content [Genome] (%)
Insertion site	-
Function	-
Species that IME can be transferred to	-
Nucleotide Sequence	FN545816 (complete IME sequence in this genome)
Replicon	-
Genome coordinates	2076881..2087639
Putative oriT region	-
Putative relaxase	coordinates: 2082284..2083513; CDR20291_1784 Family: MOB_Q

II. IME interaction with ICE/CIME/Plasmids

The interaction information of Tn6106 is not available.

The graph information of Tn6106 components from FN545816

Complete gene list of Tn6106 from FN545816
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	CDR20291_1774	2072365..2073348 [-], 984	putative uncharacterized protein
2	CDR20291_1775	2074593..2075183 [-], 591	putative uncharacterized protein
3	CDR20291_1776	2076020..2076331 [+], 312	putative conjugal transfer protein (putative single-stranded dna binding protein)
4	CDR20291_1777	2076881..2077258 [+], 378	putative uncharacterized protein
5	CDR20291_1778	2077375..2077809 [+], 435	putative uncharacterized protein
6	CDR20291_1779	2077802..2079103 [+], 1302	putative uncharacterized protein
7	CDR20291_1780	2079197..2080003 [-], 807	putative uncharacterized protein
8	CDR20291_1781	2080672..2081013 [+], 342	putative uncharacterized protein
9	CDR20291_1782	2081006..2081302 [+], 297	putative uncharacterized protein
10	CDR20291_1783	2081768..2081929 [-], 162	putative uncharacterized protein
11	CDR20291_1784	2082284..2083513 [+], 1230	putative uncharacterized protein	Relaxase
12	CDR20291_1786	2084201..2085529 [+], 1329	putative uncharacterized protein
13	CDR20291_1787	2085558..2085797 [-], 240	putative uncharacterized protein
14	CDR20291_1788	2085969..2087639 [+], 1671	putative uncharacterized protein	Integrase
15	CDR20291_1789	2087833..2088696 [+], 864	putative conjugative transposon membrane protein
16	CDR20291_1790	2089315..2091708 [+], 2394	putative conjugal transfer protein

Flanking regions

Gene may contribute to site-specific recombination

Gene may play role in conjugative transfer

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	11	Fasta

(1) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]

(2) Brouwer MS; Warburton PJ; Roberts AP; Mullany P; Allan E (2011). Genetic organisation, mobility and predicted functions of genes on integrated, mobile genetic elements in sequenced strains of Clostridium difficile. PLoS One. 6(8):e23014. [PudMed:21876735]